File format converter for FImpute2
usage : FConverter <vcf2fimpute|snpID|fimpute2vcf> [options]
help | -h
print this help and exit the program
-v
print the program version
vcf2fimpute
vcf=[file] gzip compressed vcf file
chip=[integer] chip number
[-p] print file header
[nthr=xx] use xx threads (default=4)
snpID
hd=[file] gzip compressed vcf file
[ld=[file]] gzip compressed vcf file (comma separated if many)
fimpute2vcf
gen=[file] imputed genotypes file
snp=[file] snp info file reported by FImpute
vcf=[file] gzip compressed vcf file (reference) (comma separated if many)
out=[string] output file prefix
chip=[integer] chip number (0 for a VCF with all chips)