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alexander-belikovalexander-belikov
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upgrade packages (#22)
* upgrade packages * WIP : model improvements * WIP: switched to fastapi * up workflows * implemented multi embeddings * improved cluastering analysis * better reporting * minor updates * safer execution * safer execution * hungarian to ari * improved fit * added model serialization * clean up * better fit() * better solver: solve for dbcv + ari * exposed min-scale * improved docstings/predict pipeline * improved docstings/predict pipeline * render cluster labels * added PCA-based anomaly detection * better tracking/transforms * added negative samples * update sh parameters * upd readme.MD * added pars to loop * improved random seed; added screener * fixed multi word grouping bug * better prediction * added screener_2; update docs
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‎.cursor/rules/docs.mdc‎

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---
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description: "Documentation conventions"
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globs:
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- "docs/**/*.md"
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- "mkdocs.yaml"
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alwaysApply: false
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---
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# Documentation Rules
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- Write docs in Markdown with clear headings and code examples.
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- Update `mkdocs.yaml` navigation when adding new docs.
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- Keep `README.md` concise, and move long explanations to `/docs`.
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- Use Python code fences (```python … ```) in examples.

‎.cursor/rules/pydantic-usage.mdc‎

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---
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description: "Conventions for using Pydantic models and settings"
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globs:
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- "**/*.py"
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alwaysApply: false
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---
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# Pydantic Rules
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- Use `pydantic.BaseModel` for request/response schemas.
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- For configuration, use `pydantic_settings.BaseSettings` (v2).
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- Always provide default values or use `...` for required fields.
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- Use model validators (`@field_validator`, `@model_validator`) instead of custom init logic.
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- Keep models small and focused on one purpose.

‎.cursor/rules/python-run.mdc‎

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---
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description: "Use `uv run` for running Python code instead of raw python3"
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globs:
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- "**/*.py"
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alwaysApply: true
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---
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# Running Python code
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- **Do not** run `python3 -c` directly.
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- Always invoke Python code using `uv run python <script>` or `uv run <module>` when executing project scripts.
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- Use the `uv` environment so that dependencies from `uv.lock` are respected.
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- This applies to both interactive code execution and testing.

‎.cursor/rules/python-style.mdc‎

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---
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description: "Follow project style guidelines for Python code"
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globs:
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- "**/*.py"
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alwaysApply: true
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---
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# Python Coding Rules
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- Use python 3.12 conventions: use `type | None` instead of `Optional` etc
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- Use type hints everywhere (PEP 484).
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- Use snake_case for functions and variables, PascalCase for classes.
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- Avoid unused imports.
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- Use `async`/`await` where appropriate.
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- Always keep functions small and composable.
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- Avoid using hasattr at all costs, it's not safe

‎.cursor/rules/tests.mdc‎

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---
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description: "Testing guidelines"
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globs:
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- "test/**/*.py"
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alwaysApply: false
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---
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# Testing Guidelines
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- Use `pytest` with descriptive test function names.
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- Prefer fixtures over global state.
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- For async code, use `pytest-asyncio`.
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- Ensure test coverage for:
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- Pydantic model validation
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- Env config via `BaseSettings`
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- Error cases and edge cases
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- Run tests with `uv run pytest test`.

‎.cursor/rules/uv-deps.mdc‎

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---
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description: "Dependency management with uv"
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globs:
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- "pyproject.toml"
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- "uv.lock"
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alwaysApply: false
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---
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# Dependency Management
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- Pin versions in `pyproject.toml` for reproducibility.
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- Run `uv pip check` to validate the dependency tree.

‎.github/workflows/build-docs.yml‎

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name: Build GitHub Pages
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on:
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push:
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branches:
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- main
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paths:
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- 'docs/**'
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- 'mkdocs.yml'
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- 'pelinker/**' # Check this path
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workflow_dispatch:
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permissions:
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contents: write
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pages: write
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id-token: write
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jobs:
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build:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v5
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with:
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.10'
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- name: Install uv
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uses: astral-sh/setup-uv@v7
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with:
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version: "0.10.12"
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- name: Install dependencies
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run: |
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uv sync --extra docs
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- name: Build site
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run: |
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uv run mkdocs build --site-dir _site
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- name: Upload Pages artifact
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uses: actions/upload-pages-artifact@v3
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with:
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path: _site
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deploy:
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needs: build
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environment:
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name: github-pages
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url: ${{ steps.deployment.outputs.page_url }}
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runs-on: ubuntu-latest
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steps:
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- name: Deploy to GitHub Pages
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id: deployment
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uses: actions/deploy-pages@v4

‎.github/workflows/pre-commit.yml‎

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name: pre-commit
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on:
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pull_request:
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push:
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branches: [main]
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jobs:
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pre-commit:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v5
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- name: Install uv
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uses: astral-sh/setup-uv@v7
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with:
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version: "0.10.12"
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- name: Install dependencies (including dev)
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run: uv sync --extra dev --no-install-project
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- name: Run pre-commit
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run: uv run pre-commit run --all-files

‎.github/workflows/pypi-publish.yml‎

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name: Upload Python Package to PyPI
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on:
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release:
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types: [published]
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permissions:
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contents: read
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jobs:
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pypi-publish:
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runs-on: ubuntu-latest
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environment:
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name: pypi
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url: https://pypi.org/p/pelinker
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permissions:
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id-token: write
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steps:
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- uses: actions/checkout@v5
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.10'
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- name: Install uv
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uses: astral-sh/setup-uv@v7
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with:
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version: "0.10.12"
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- name: Build and publish
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run: |
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uv build
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uv publish
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env:
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UV_PUBLISH_TOKEN: ${{ secrets.PYPI_API_TOKEN }}

‎.pre-commit-config.yaml‎

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repos:
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# Python linting and formatting
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.14.14
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rev: v0.15.7
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hooks:
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- id: ruff-check
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args: [--fix, --ignore, E722]

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