Documents and SOPs for the GRDI-AMR2 Project

This repo is for hosting or linking documentation for the GRDI-AMR2 Project. Please contact Emil Jurga and Gabriel Wajnberg for questions and assistance.

Links to documentation

Science Network:

A connection to the NMLB's Science Network is required to access IRIDA to store sequences, and the dashboards. Documentation on this is available at the GRDI-AMR2 GCXchange repository. Contact Emil Jurga for access to this repository or questions regarding the NMLB's Science Network.

Metadata Standardization:

Several tools and SOPs are available to help standardize your sample, isolate, and sequence metadata as part of the project.

Standard Operating Procedures:

• SOP for standardizing metadata: A webpage that outlines how to standardize sample, isolate, and sequence metadata.
• SOPs and documentation for the GRDI One Health Data Standard: A directory of PDFs that dives into more detail about the data standard, including detailed information on the fields and pick-lists.

Tools:

• The DataHarmonizer: The recommended tool for data standardization. A standalone webapp that provides a spreadsheet-like interface to fill out and validate data according to the GRDI-OH standard.
• The Excel Spreadsheet: An excel spreadsheet implementation of the standard.