I am unable to recreate fragment files for use with ArchR from the fastq files linked in GEO: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA939339&o=acc_s%3Aa
CellRanger error:
Log message:
0.5% (< 10%) of read pairs have a valid 10x barcode. This could be a result of poor sequencing quality, a sample mixup, or running the wrong pipeline, for example, running cellranger-atac on Multiome ATAC + GEX data, or vice versa.
Are you able to provide the fragment files or ArchR project directly?
I am unable to recreate fragment files for use with ArchR from the fastq files linked in GEO: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA939339&o=acc_s%3Aa
CellRanger error:
Log message:
0.5% (< 10%) of read pairs have a valid 10x barcode. This could be a result of poor sequencing quality, a sample mixup, or running the wrong pipeline, for example, running
cellranger-atacon Multiome ATAC + GEX data, or vice versa.Are you able to provide the fragment files or ArchR project directly?