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Copy pathyeastChromNames.py
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56 lines (48 loc) · 4.1 KB
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# -*- coding: utf-8 -*-
"""
Created on Thu Jun 25 08:58:26 2015
@author: mplace
"""
chromSGD = { "chrI" : "ref|NC_001133|", "chrII" : "ref|NC_001134|", "chrIII" : "ref|NC_001135|",
"chrIV" : "ref|NC_001136|", "chrV" : "ref|NC_001137|", "chrVI" : "ref|NC_001138|",
"chrVII" : "ref|NC_001139|", "chrVIII" : "ref|NC_001140|", "chrIX" : "ref|NC_001141|",
"chrX" : "ref|NC_001142|", "chrXI" : "ref|NC_001143|", "chrXII" : "ref|NC_001144|",
"chrXIII" : "ref|NC_001145|", "chrXIV" : "ref|NC_001146|", "chrXV" : "ref|NC_001147|",
"chrXVI" : "ref|NC_001148|", "chrMito" : "ref|NC_001224|", "chrmt" : "ref|NC_001224|"
}
chromArabic = { "ref|NC_001133|" : "chr1", "ref|NC_001134|" : "chr2", "ref|NC_001135|" : "chr3",
"ref|NC_001136|" : "chr4", "ref|NC_001137|" : "chr5", "ref|NC_001138|" : "chr6",
"ref|NC_001139|" : "chr7", "ref|NC_001140|" : "chr8", "ref|NC_001141|" : "chr9",
"ref|NC_001142|" : "chr10", "ref|NC_001143|" : "chr11", "ref|NC_001144|" : "chr12",
"ref|NC_001145|" : "chr13", "ref|NC_001146|" : "chr14", "ref|NC_001147|" : "chr15",
"ref|NC_001148|" : "chr16", "ref|NC_001224|" : "chr17" }
chromArabic64 = { "ref|NC_001133|[R64]" : "chr1", "ref|NC_001134|[R64]" : "chr2", "ref|NC_001135|[R64]" : "chr3",
"ref|NC_001136|[R64]" : "chr4", "ref|NC_001137|[R64]" : "chr5", "ref|NC_001138|[R64]" : "chr6",
"ref|NC_001139|[R64]" : "chr7", "ref|NC_001140|[R64]" : "chr8", "ref|NC_001141|[R64]" : "chr9",
"ref|NC_001142|[R64]" : "chr10", "ref|NC_001143|[R64]" : "chr11", "ref|NC_001144|[R64]" : "chr12",
"ref|NC_001145|[R64]" : "chr13", "ref|NC_001146|[R64]" : "chr14", "ref|NC_001147|[R64]" : "chr15",
"ref|NC_001148|[R64]" : "chr16", "ref|NC_001224|[R64]" : "chr17" }
chromRoman = { "ref|NC_001133|" : "chrI", "ref|NC_001134|" : "chrII", "ref|NC_001135|" : "chrIII",
"ref|NC_001136|" : "chrIV", "ref|NC_001137|" : "chrV", "ref|NC_001138|" : "chrVI",
"ref|NC_001139|" : "chrVII", "ref|NC_001140|" : "chrVIII", "ref|NC_001141|" : "chrIX",
"ref|NC_001142|" : "chrX", "ref|NC_001143|" : "chrXI", "ref|NC_001144|" : "chrXII",
"ref|NC_001145|" : "chrXIII", "ref|NC_001146|" : "chrXIV", "ref|NC_001147|" : "chrXV",
"ref|NC_001148|" : "chrXVI", "ref|NC_001224|" : "chrMito" }
chromRoman64 = { "ref|NC_001133|[R64]" : "chrI", "ref|NC_001134|[R64]" : "chrII", "ref|NC_001135|[R64]" : "chrIII",
"ref|NC_001136|[R64]" : "chrIV", "ref|NC_001137|[R64]" : "chrV", "ref|NC_001138|[R64]" : "chrVI",
"ref|NC_001139|[R64]" : "chrVII", "ref|NC_001140|[R64]" : "chrVIII", "ref|NC_001141|[R64]" : "chrIX",
"ref|NC_001142|[R64]" : "chrX", "ref|NC_001143|[R64]" : "chrXI", "ref|NC_001144|[R64]" : "chrXII",
"ref|NC_001145|[R64]" : "chrXIII", "ref|NC_001146|[R64]" : "chrXIV", "ref|NC_001147|[R64]" : "chrXV",
"ref|NC_001148|[R64]" : "chrXVI", "ref|NC_001224|[R64]" : "chrXVII" }
chromNum = { "1" : "ref|NC_001133|", "2" : "ref|NC_001134|", "3" : "ref|NC_001135|",
"4" : "ref|NC_001136|", "5" : "ref|NC_001137|", "6" : "ref|NC_001138|",
"7" : "ref|NC_001139|", "8" : "ref|NC_001140|", "9" : "ref|NC_001141|",
"10" : "ref|NC_001142|", "11" : "ref|NC_001143|", "12" : "ref|NC_001144|",
"13" : "ref|NC_001145|", "14" : "ref|NC_001146|", "15" : "ref|NC_001147|",
"16" : "ref|NC_001148|", "mito" : "ref|NC_001224|"}
chromNum64 = { "1" : "ref|NC_001133|[R64]", "2" : "ref|NC_001134|[R64]", "3" : "ref|NC_001135|[R64]",
"4" : "ref|NC_001136|[R64]", "5" : "ref|NC_001137|[R64]", "6" : "ref|NC_001138|[R64]",
"7" : "ref|NC_001139|[R64]", "8" : "ref|NC_001140|[R64]", "9" : "ref|NC_001141|[R64]",
"10" : "ref|NC_001142|[R64]", "11" : "ref|NC_001143|[R64]", "12" : "ref|NC_001144|[R64]",
"13" : "ref|NC_001145|[R64]", "14" : "ref|NC_001146|[R64]", "15" : "ref|NC_001147|[R64]",
"16" : "ref|NC_001148|[R64]", "mito" : "ref|NC_001224|[R64]"}