From d3eb0aefb2c2b5c6073b6d2ac09f35fe67a164cd Mon Sep 17 00:00:00 2001 From: Dave B Date: Mon, 10 Jul 2017 15:37:48 -0400 Subject: [PATCH] Move fastx_toolkit to legacy pending adoption by IUC. --- .../fasta_clipping_histogram/.shed.yml | 0 .../fasta_clipping_histogram.xml | 0 .../fasta_clipping_histogram/tool_dependencies.xml | 0 .../fastx_toolkit/fasta_formatter/.shed.yml | 0 .../fasta_formatter/fasta_formatter.xml | 0 .../test-data/fasta_formatter1.fasta | 0 .../fasta_formatter/test-data/fasta_formatter1.out | 0 .../fasta_formatter/test-data/fasta_formatter2.out | 0 .../fasta_formatter/tool_dependencies.xml | 0 .../fasta_nucleotide_changer/.shed.yml | 0 .../fasta_nucleotide_changer.xml | 0 .../test-data/fasta_nuc_change1.out | 0 .../test-data/fasta_nuc_change2.out | 0 .../test-data/fasta_nuc_changer1.fasta | 0 .../test-data/fasta_nuc_changer2.fasta | 0 .../fasta_nucleotide_changer/tool_dependencies.xml | 0 .../fastx_toolkit/fastq_quality_boxplot/.shed.yml | 0 .../fastq_quality_boxplot/fastq_quality_boxplot.xml | 0 .../fastq_quality_boxplot_1.png | Bin .../fastq_quality_boxplot_2.png | Bin .../fastq_quality_boxplot_3.png | Bin .../fastq_quality_boxplot/tool_dependencies.xml | 0 .../fastx_toolkit/fastq_quality_converter/.shed.yml | 0 .../fastq_quality_converter.xml | 0 .../test-data/fastq_qual_conv1.fastq | 0 .../test-data/fastq_qual_conv1.out | 0 .../test-data/fastq_qual_conv1a.out | 0 .../test-data/fastq_qual_conv2.fastq | 0 .../test-data/fastq_qual_conv2.out | 0 .../test-data/fastq_qual_conv2n.out | 0 .../fastq_quality_converter/tool_dependencies.xml | 0 .../fastx_toolkit/fastq_quality_filter/.shed.yml | 0 .../fastq_quality_filter/fastq_quality_filter.xml | 0 .../test-data/fastq_qual_filter1.fastq | 0 .../test-data/fastq_qual_filter1a.out | 0 .../test-data/fastq_qual_filter1b.out | 0 .../fastq_quality_filter/tool_dependencies.xml | 0 .../fastx_toolkit/fastq_to_fasta/.shed.yml | 0 .../fastx_toolkit/fastq_to_fasta/fastq_to_fasta.xml | 0 .../fastq_to_fasta/test-data/fastq_to_fasta1.fastq | 0 .../fastq_to_fasta/test-data/fastq_to_fasta1a.out | 0 .../fastq_to_fasta/test-data/fastq_to_fasta1b.out | 0 .../fastq_to_fasta/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_artifacts_filter/.shed.yml | 0 .../fastx_artifacts_filter.xml | 0 .../test-data/fastx_artifacts1.fasta | 0 .../test-data/fastx_artifacts1.out | 0 .../test-data/fastx_artifacts2.fastq | 0 .../test-data/fastx_artifacts2.out | 0 .../fastx_artifacts_filter/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_barcode_splitter/.shed.yml | 0 .../barcode_splitter_output_example.png | Bin .../fastx_barcode_splitter.xml | 0 .../fastx_barcode_splitter_galaxy_wrapper.sh | 0 .../test-data/fastx_barcode_splitter1.fastq | 0 .../test-data/fastx_barcode_splitter1.out | 0 .../test-data/fastx_barcode_splitter1.txt | 0 .../fastx_barcode_splitter/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_clipper/.shed.yml | 0 .../fastx_toolkit/fastx_clipper/fastx_clipper.xml | 0 .../fastx_clipper/fastx_clipper_example.png | Bin .../fastx_clipper/fastx_clipper_illustration.png | Bin .../fastx_clipper/test-data/fastx_clipper1.fastq | 0 .../fastx_clipper/test-data/fastx_clipper1a.out | 0 .../tool-data/fastx_clipper_sequences.txt.sample | 0 .../fastx_clipper/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_collapser/.shed.yml | 0 .../fastx_collapser/fastx_collapser.xml | 0 .../test-data/fasta_collapser1.fasta | 0 .../fastx_collapser/test-data/fasta_collapser1.out | 0 .../fastx_collapser/tool_dependencies.xml | 0 .../fastx_nucleotides_distribution/.shed.yml | 0 .../fastq_nucleotides_distribution_1.png | Bin .../fastq_nucleotides_distribution_2.png | Bin .../fastq_nucleotides_distribution_3.png | Bin .../fastq_nucleotides_distribution_4.png | Bin .../fastx_nucleotides_distribution.xml | 0 .../tool_dependencies.xml | 0 .../fastx_quality_statistics/.shed.yml | 0 .../fastx_quality_statistics.xml | 0 .../test-data/fastq_stats1.fastq | 0 .../test-data/fastq_stats1.out | 0 .../fastx_quality_statistics/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_renamer/.shed.yml | 0 .../fastx_toolkit/fastx_renamer/fastx_renamer.xml | 0 .../fastx_renamer/tool_dependencies.xml | 0 .../fastx_reverse_complement/.shed.yml | 0 .../fastx_reverse_complement.xml | 0 .../test-data/fastx_rev_comp1.fasta | 0 .../test-data/fastx_rev_comp2.fastq | 0 .../test-data/fastx_reverse_complement1.out | 0 .../test-data/fastx_reverse_complement2.out | 0 .../fastx_reverse_complement/tool_dependencies.xml | 0 .../fastx_toolkit/fastx_trimmer/.shed.yml | 0 .../fastx_toolkit/fastx_trimmer/fastx_trimmer.xml | 0 .../fastx_trimmer/test-data/fastx_trimmer1.fasta | 0 .../fastx_trimmer/test-data/fastx_trimmer1.out | 0 .../fastx_trimmer/test-data/fastx_trimmer2.fastq | 0 .../fastx_trimmer/test-data/fastx_trimmer2.out | 0 .../fastx_trimmer/tool_dependencies.xml | 0 100 files changed, 0 insertions(+), 0 deletions(-) rename {tool_collections => legacy}/fastx_toolkit/fasta_clipping_histogram/.shed.yml 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