Error: can't read attribute 'element_size_um' from dataset

[zhangzhg1990]

Dear HDF5 developers,

I got an "can't read attribute 'element_size_um' from dataset" issue when loading the .hdf5 produced from ESRF. It looks like the element_size_um is a hard-coded name for voxel size expected by the Fiji pluggin but missing by now. More details can be seen via the attached hdf-error.txt.

hdf5-error.txt

Looking forward to having this issue solved.

best

[mkitti]

I believe the message is mainly a warning. Is it preventing the file from loading?

[zhangzhg1990]

dear mkitti, sorry for my late response. Yes, this blocks the file loading

[ctrueden]

@zhangzhg1990 Thanks for the report!

Looking forward to having this issue solved.

Unfortunately, no one is currently pledged to fix issues with this plugin. (Technically, @rejsmont currently has debugger role, but I don't think he's actually responding these days.) So we'd need your help to solve it. If you have sufficient time and interest to propose a fix as a PR, I would make time to review it.