SynBioBench/environment.yml at main · field-claw/SynBioBench · GitHub

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name: synbiobench
channels:
  - conda-forge
  - defaults
dependencies:
  - aiohttp=3.9.1=py312h41838bb_0
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - annotated-types=0.6.0=pyhd8ed1ab_0
  - anyio=3.7.1=pyhd8ed1ab_0
  - appnope=0.1.3=pyhd8ed1ab_0
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-timeout=4.0.3=pyhd8ed1ab_0
  - attrs=23.1.0=pyh71513ae_1
  - bottleneck=1.3.5=py312h32608ca_0
  - brotli-python=1.1.0=py312heafc425_1
  - bzip2=1.0.8=h10d778d_5
  - ca-certificates=2023.08.22=hecd8cb5_0
  - cachetools=5.3.2=pyhd8ed1ab_0
  - certifi=2023.11.17=py312hecd8cb5_0
  - cffi=1.16.0=py312h38bf5a0_0
  - charset-normalizer=3.3.2=pyhd8ed1ab_0
  - colorama=0.4.6=pyhd8ed1ab_0
  - comm=0.1.4=pyhd8ed1ab_0
  - cryptography=41.0.7=py312h08cb003_1
  - dataclasses-json=0.6.3=pyhd8ed1ab_0
  - debugpy=1.8.0=py312heafc425_1
  - decorator=5.1.1=pyhd8ed1ab_0
  - exceptiongroup=1.2.0=pyhd8ed1ab_0
  - executing=2.0.1=pyhd8ed1ab_0
  - frozenlist=1.4.0=py312h104f124_1
  - google-api-core=2.15.0=pyhd8ed1ab_0
  - google-auth=2.25.2=pyhca7485f_0
  - googleapis-common-protos=1.62.0=pyhd8ed1ab_0
  - greenlet=3.0.2=py312h444b7ae_0
  - idna=3.6=pyhd8ed1ab_0
  - importlib_metadata=7.0.0=hd8ed1ab_0
  - iniconfig=2.0.0=pyhd8ed1ab_0
  - ipykernel=6.26.0=pyh3cd1d5f_0
  - ipython=8.18.1=pyh707e725_3
  - jedi=0.19.1=pyhd8ed1ab_0
  - jsonpatch=1.33=pyhd8ed1ab_0
  - jsonpointer=2.4=py312hb401068_3
  - jupyter_client=8.6.0=pyhd8ed1ab_0
  - jupyter_core=5.5.0=py312hb401068_0
  - langchain=0.0.340=pyhd8ed1ab_0
  - langsmith=0.0.69=pyhd8ed1ab_0
  - libabseil=20230802.1=cxx17_h048a20a_0
  - libblas=3.9.0=20_osx64_openblas
  - libcblas=3.9.0=20_osx64_openblas
  - libcxx=16.0.6=hd57cbcb_0
  - libexpat=2.5.0=hf0c8a7f_1
  - libffi=3.4.2=h0d85af4_5
  - libgfortran=5.0.0=13_2_0_h97931a8_1
  - libgfortran5=13.2.0=h2873a65_1
  - liblapack=3.9.0=20_osx64_openblas
  - libopenblas=0.3.25=openmp_hfef2a42_0
  - libprotobuf=4.24.4=h0ee05dc_0
  - libsodium=1.0.18=hbcb3906_1
  - libsqlite=3.44.2=h92b6c6a_0
  - libzlib=1.2.13=h8a1eda9_5
  - llvm-openmp=17.0.6=hb6ac08f_0
  - marshmallow=3.20.1=pyhd8ed1ab_0
  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
  - multidict=6.0.4=py312h97956c7_1
  - mypy_extensions=1.0.0=pyha770c72_0
  - ncurses=6.4=h93d8f39_2
  - nest-asyncio=1.5.8=pyhd8ed1ab_0
  - numexpr=2.8.7=py312haf8ecfc_4
  - numpy=1.26.2=py312hfd3bce2_0
  - openapi-schema-pydantic=1.2.4=pyhd8ed1ab_0
  - openssl=3.2.0=hd75f5a5_1
  - packaging=23.2=pyhd8ed1ab_0
  - pandas=2.1.4=py312he282a81_0
  - parso=0.8.3=pyhd8ed1ab_0
  - pexpect=4.8.0=pyh1a96a4e_2
  - pickleshare=0.7.5=py_1003
  - pip=23.3.1=pyhd8ed1ab_0
  - platformdirs=4.1.0=pyhd8ed1ab_0
  - pluggy=1.3.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.41=pyha770c72_0
  - protobuf=4.24.4=py312h317d3df_0
  - psutil=5.9.5=py312h104f124_1
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - pyasn1=0.5.1=pyhd8ed1ab_0
  - pyasn1-modules=0.3.0=pyhd8ed1ab_0
  - pycparser=2.21=pyhd8ed1ab_0
  - pydantic=2.5.2=pyhd8ed1ab_0
  - pydantic-core=2.14.5=py312h6e28e45_0
  - pygments=2.17.2=pyhd8ed1ab_0
  - pyopenssl=23.3.0=pyhd8ed1ab_0
  - pysocks=1.7.1=pyha2e5f31_6
  - pytest=7.4.3=pyhd8ed1ab_0
  - pytest-subtests=0.11.0=pyhd8ed1ab_0
  - python=3.12.0=h30d4d87_0_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-tzdata=2023.3=pyhd3eb1b0_0
  - python_abi=3.12=4_cp312
  - pytz=2023.3.post1=py312hecd8cb5_0
  - pyu2f=0.1.5=pyhd8ed1ab_0
  - pyyaml=6.0.1=py312h104f124_1
  - pyzmq=25.1.2=py312hc789acb_0
  - readline=8.2=h9e318b2_1
  - requests=2.31.0=pyhd8ed1ab_0
  - rsa=4.9=pyhd8ed1ab_0
  - setuptools=68.2.2=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - sniffio=1.3.0=pyhd8ed1ab_0
  - sqlalchemy=2.0.23=py312h41838bb_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - tenacity=8.2.3=pyhd8ed1ab_0
  - tk=8.6.13=h1abcd95_1
  - tomli=2.0.1=pyhd8ed1ab_0
  - tornado=6.3.3=py312h104f124_1
  - traitlets=5.14.0=pyhd8ed1ab_0
  - typing-extensions=4.8.0=hd8ed1ab_0
  - typing_extensions=4.8.0=pyha770c72_0
  - typing_inspect=0.9.0=pyhd8ed1ab_0
  - tzdata=2023c=h71feb2d_0
  - urllib3=2.1.0=pyhd8ed1ab_0
  - wcwidth=0.2.12=pyhd8ed1ab_0
  - wheel=0.42.0=pyhd8ed1ab_0
  - xz=5.2.6=h775f41a_0
  - yaml=0.2.5=h0d85af4_2
  - yarl=1.9.3=py312h41838bb_0
  - zeromq=4.3.5=h93d8f39_0
  - zipp=3.17.0=pyhd8ed1ab_0
  - pip:
    - backoff==2.2.1
    - cohere==4.37
    - contourpy==1.2.0
    - cycler==0.12.1
    - distro==1.8.0
    - fastavro==1.9.1
    - fonttools==4.46.0
    - google-ai-generativelanguage==0.3.3
    - google-cloud-aiplatform==1.37.0
    - google-cloud-bigquery==3.13.0
    - google-cloud-core==2.4.1
    - google-cloud-resource-manager==1.11.0
    - google-cloud-storage==2.13.0
    - google-crc32c==1.5.0
    - google-generativeai==0.2.2
    - google-resumable-media==2.6.0
    - grpc-google-iam-v1==0.13.0
    - grpcio==1.60.0
    - grpcio-status==1.60.0
    - h11==0.14.0
    - httpcore==1.0.2
    - httpx==0.25.2
    - importlib-metadata==6.11.0
    - kiwisolver==1.4.5
    - matplotlib==3.8.2
    - openai==1.3.8
    - pillow==10.1.0
    - proto-plus==1.23.0
    - pyparsing==3.1.1
    - seaborn==0.13.0
    - shapely==2.0.2
    - tqdm==4.66.1
prefix: /Users/roselle/opt/anaconda3/envs/synbiobench