From 5f36c20157256dea29b5d8422deeda67dbdc6bf6 Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Wed, 8 Jul 2026 21:30:48 +0100 Subject: [PATCH 1/2] Refine placeholders Updated placeholders --- instructors/data/01-practical-activity-2.R | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/instructors/data/01-practical-activity-2.R b/instructors/data/01-practical-activity-2.R index b442887d..80988a3a 100644 --- a/instructors/data/01-practical-activity-2.R +++ b/instructors/data/01-practical-activity-2.R @@ -50,8 +50,8 @@ dat_delays %>% dat_incidence <- dat_linelist %>% # Transform from individual-level to time-aggregate incidence2::incidence( - date_index = #, - groups = #, # the categorical variable + date_index = #, # add one or more + groups = #, # add one or more interval = #, complete_dates = TRUE ) @@ -68,7 +68,7 @@ dat_incidence %>% fill = #, # the categorical variable # #nrow = 1, # 1 or 2 show_cases = FALSE, # - angle = 45, # + #angle = 45, # n_breaks = 5 # ) From 70c59a91822815e71e205a55608bcbbd1a0f4a09 Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Wed, 8 Jul 2026 21:34:32 +0100 Subject: [PATCH 2/2] Fix punctuation in epidemic transmission explanation Corrected punctuation and formatting in the text. --- instructors/03-practical-tutors.qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/instructors/03-practical-tutors.qmd b/instructors/03-practical-tutors.qmd index 874c801e..c5b382b9 100644 --- a/instructors/03-practical-tutors.qmd +++ b/instructors/03-practical-tutors.qmd @@ -567,7 +567,7 @@ From the plot of cumulative cases by day for each simulated chain: | 5 | R = 1.5, k = 0.1 | 65 | ~890 | ~50 days | | 6 | R = 1.5, k = 0.5 | 216 | ~850 | ~90 days | -Individual-level variation in transmission means that although the probability of extinction is high, new index cases also have the potential for explosive regrowth of the epidemic. This is reflected above: most simulated chains die out quickly, while a small number — especially at low dispersion (k) — cross the 100-case threshold. +Individual-level variation in transmission means that although the probability of extinction is high, new index cases also have the potential for explosive regrowth of the epidemic. This is reflected above: most simulated chains die out quickly, while a small number, especially at low dispersion (k), cross the 100-case threshold. # Continue your learning path @@ -589,4 +589,4 @@ Epi R handbook episode on {epicontacts} to visualise transmission chains in time ::: -# end \ No newline at end of file +# end