epifor/jan-def-default.xml at master · epidemics/epifor · GitHub

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<simulation xmlns="http://www.gleamviz.org/xmlns/gleamviz_v4_0">
  <definition id="1585188102568.574" name="batch-2020-03-26T03-01-41.305671+01-00 seasonality=0.85 traffic=20 beta=1.01" type="multi-run">
    <compartmentalModel>
      <compartments>
        <compartment color="#51b2b7" id="Susceptible" isCarrier="false" isCommuter="true" isSecondary="false" isTraveller="true" x="409" y="35" />
        <compartment color="#f59123" id="Exposed" isCarrier="true" isCommuter="true" isSecondary="true" isTraveller="true" x="218" y="158" />
        <compartment color="#ff5127" id="Infectious" isCarrier="true" isCommuter="false" isSecondary="false" isTraveller="false" x="218" y="291" />
        <compartment color="#89c443" id="Recovered" isCarrier="false" isCommuter="true" isSecondary="false" isTraveller="true" x="218" y="430" />
      </compartments>
      <ratioTransitions>
        <ratioTransition labelPosition="0.5" ratio="epsilon" source="Exposed" target="Infectious" />
        <ratioTransition labelPosition="0.5" ratio="mu" source="Infectious" target="Recovered" />
        <ratioTransition labelPosition="0.5" ratio="imu" source="Recovered" target="Susceptible" />
      </ratioTransitions>
      <infections>
        <infection source="Susceptible" target="Exposed">
          <infector ratio="beta" source="Infectious" x="130" y="0" />
        </infection>
      </infections>
      <variables>
        <variable name="beta" value="1.01" />
        <variable name="epsilon" value="0.2" />
        <variable name="mu" value="0.5" />
        <variable name="imu" value="0" />
      </variables>
    </compartmentalModel>
    <parameters commutingModel="gravity" commutingRate="7" duration="350" flightsTimeAggregation="month" occupancyRate="20" outbreakSize="1" runCount="3" seasonalityAlphaMin="0.85" seasonalityEnabled="true" secondaryEvents="1" startDate="2020-03-25" />
    <notes />
    <initialCompartments>
      <initialCompartment compartment="Susceptible" fraction="90" />
      <initialCompartment compartment="Recovered" fraction="10" />
    </initialCompartments>
    <seeds>
	<seed city="2966" compartment="Infectious" number="405970" />
        <seed city="2518" compartment="Infectious" number="312461" />
    </seeds><resultCompartments>
      <id>Susceptible</id>
      <id>Exposed</id>
      <id>Infectious</id>
      <id>Recovered</id>
    </resultCompartments>
    <exceptions>
      <exception basins="" continents="" countries="39" from="2020-02-25" hemispheres="" regions="" till="2025-02-19">
        <variable name="beta" value="0.3" />
      </exception>
      <exception basins="477" continents="" countries="" from="2020-03-08" hemispheres="" regions="" till="2025-02-19">
        <variable name="beta" value="0.15" />
      </exception>
    </exceptions>
  </definition>
  <metadata>
    <creationDate>2020-02-25T15:10:50</creationDate>
    <clientVersion>7.0</clientVersion>
  </metadata>
  <extradata>
    <userVariableOrder>beta epsilon mu imu</userVariableOrder>
  </extradata>
</simulation>