Operating System
Ubuntu 22.04
Other Linux
No response
Workflow Version
v1.7.2
Workflow Execution
Command line (Cluster)
Other workflow execution
No response
EPI2ME Version
No response
CLI command run
N/A
Workflow Execution - CLI Execution Profile
None
What happened?
You should correct line 97 of differential_expression.nf from:
cut -d',' -f3 sample_sheet.csv | tail -n +2 | paste -sd '\t' - | sed 's/\t*\$//' > expected_colnames
to
cut -d',' -f$alias_col sample_sheet.csv | tail -n +2 | paste -sd '\t' - | sed 's/\t*\$//' > expected_colnames
to avoid possible exit code 70 from a hardcoded column position value.
Relevant log output
Application activity log entry
Were you able to successfully run the latest version of the workflow with the demo data?
yes
Other demo data information
Operating System
Ubuntu 22.04
Other Linux
No response
Workflow Version
v1.7.2
Workflow Execution
Command line (Cluster)
Other workflow execution
No response
EPI2ME Version
No response
CLI command run
N/A
Workflow Execution - CLI Execution Profile
None
What happened?
You should correct line 97 of
differential_expression.nffrom:cut -d',' -f3 sample_sheet.csv | tail -n +2 | paste -sd '\t' - | sed 's/\t*\$//' > expected_colnamesto
cut -d',' -f$alias_col sample_sheet.csv | tail -n +2 | paste -sd '\t' - | sed 's/\t*\$//' > expected_colnamesto avoid possible exit code 70 from a hardcoded column position value.
Relevant log output
Application activity log entry
Were you able to successfully run the latest version of the workflow with the demo data?
yes
Other demo data information