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Special handling for import/export warnings for optimized_production_rates and optimized_threshold_b test files t #1561

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@kdahlquist

For the test files:

  • t_3-genes_6 edges_wrong-geneID-opt-prod-rates-sheet.xlsx
  • t_3-genes_6 edges_wrong-geneID-opt-threshold_b-sheet.xlsx

Current import warning gives two warnings:

  1. GRNsight has detected that there are missing genes and production rates in the imported workbook's optimized_production_rates sheet. GRNsight is checking because a production rate should have been provided as GRNmap output, but will not affect the display of the graph in GRNsight. The missing genes and values are: CIN5.
  2. GRNsight has detected that there are extra genes in the imported workbook's 'optimized_production_rates' sheet. The genes in the 'optimized_production_rates' sheet need to match the genes in the 'network' sheet to use this workbook` as an input file for GRNmap, but will not affect the display of the graph in GRNsight. The extra genes are: ACT1.

The top warning message is correct, but the bottom warning needs to be reworded to:
2. GRNsight has detected that there are extra genes in the imported workbook's 'optimized_production_rates' sheet. The genes in the 'optimized_production_rates' sheet should match the genes in the 'network' sheet from the GRNmap output, but will not affect the display of the graph in GRNsight. The extra genes are: ACT1.

Current export warning:

  • GRNsight has detected that there are extra genes in the exported workbook's 'optimized_production_rates' sheet. The genes in the 'optimized_production_rates' sheet need to match the genes in the 'network' sheet to use this workbook` as an input file for GRNmap, but will not affect the display of the graph in GRNsight. The extra genes are: ACT1.

Change this to:

  • GRNsight has detected that there are extra genes in the exported workbook's 'optimized_production_rates' sheet. The genes in the 'optimized_production_rates' sheet should match the genes in the 'network' sheet from the GRNmap output, but will not affect the display of the graph in GRNsight. The extra genes are: ACT1.

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