setup-git.sh

#!/bin/bash
set -e

REPO_NAME="cs4vwb"
REPO_DESCRIPTION="Claude Science custom app for Verily Workbench"

echo "=========================================="
echo "Setting up Git repository for $REPO_NAME"
echo "=========================================="
echo

# Check if we're already in a git repo
if [ -d .git ]; then
    echo "Git repository already initialized."
    read -p "Do you want to reinitialize? This will remove existing git history. (y/N): " -n 1 -r
    echo
    if [[ $REPLY =~ ^[Yy]$ ]]; then
        rm -rf .git
        echo "Removed existing .git directory"
    else
        echo "Keeping existing git repository. Exiting."
        exit 0
    fi
fi

# Initialize git repository
echo "Initializing git repository..."
git init
git add .
git commit -m "Initial commit: Claude Science custom app for Verily Workbench"
echo "✓ Git repository initialized and files committed"
echo

# Check if GitHub CLI is available
if command -v gh &> /dev/null; then
    echo "GitHub CLI (gh) detected!"

    # Check if authenticated
    if gh auth status &> /dev/null; then
        echo "You are authenticated with GitHub."
        echo
        read -p "Do you want to create the repository on GitHub now? (Y/n): " -n 1 -r
        echo
        if [[ ! $REPLY =~ ^[Nn]$ ]]; then
            # Ask for public or private
            echo
            echo "Repository visibility:"
            echo "  1) Public"
            echo "  2) Private"
            read -p "Choose (1 or 2, default: 2): " -n 1 -r VISIBILITY
            echo

            VISIBILITY_FLAG="--private"
            if [[ $VISIBILITY == "1" ]]; then
                VISIBILITY_FLAG="--public"
            fi

            # Create the repository
            echo "Creating GitHub repository..."
            gh repo create "$REPO_NAME" $VISIBILITY_FLAG --description "$REPO_DESCRIPTION" --source=. --remote=origin

            echo
            echo "✓ Repository created on GitHub"

            # Push to GitHub
            echo "Pushing to GitHub..."
            git push -u origin main || git push -u origin master

            echo
            echo "=========================================="
            echo "✓ SUCCESS!"
            echo "=========================================="
            echo
            echo "Your repository is now available at:"
            gh repo view --web --json url -q .url || echo "https://github.com/$(gh api user -q .login)/$REPO_NAME"
            echo
            echo "Next steps:"
            echo "  1. Go to your Verily Workbench workspace"
            echo "  2. Create a new Custom app"
            echo "  3. Use the repository URL above"
            echo
            exit 0
        fi
    else
        echo "GitHub CLI is installed but not authenticated."
        echo "Run 'gh auth login' to authenticate, then run this script again."
        echo
    fi
else
    echo "GitHub CLI (gh) not found."
    echo "You can install it from: https://cli.github.com/"
    echo
fi

# Manual setup instructions
echo "=========================================="
echo "Manual Setup Required"
echo "=========================================="
echo
echo "Please complete these steps:"
echo
echo "1. Go to GitHub and create a new repository:"
echo "   https://github.com/new"
echo
echo "2. Repository name: $REPO_NAME"
echo "   Description: $REPO_DESCRIPTION"
echo "   Choose Public or Private"
echo "   DO NOT initialize with README, .gitignore, or license"
echo
echo "3. After creating the repository, run these commands:"
echo
echo "   git remote add origin https://github.com/YOUR_USERNAME/$REPO_NAME.git"
echo "   git branch -M main"
echo "   git push -u origin main"
echo
echo "   (Replace YOUR_USERNAME with your GitHub username)"
echo
echo "=========================================="
echo
echo "Alternatively, install GitHub CLI for automatic setup:"
echo "  https://cli.github.com/"
echo