muRtools/NAMESPACE at master · demuellae/muRtools · GitHub

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# Generated by roxygen2: do not edit by hand

export(aggregateDf)
export(bed2GRanges)
export(camel2underscore)
export(chordDiagramFromContingencyTable)
export(col.text.2.hex)
export(colgrad.methylation.rb)
export(colgrad.methylation.yb)
export(colorize.value)
export(colpal.PhFr.a)
export(colpal.bde)
export(colpal.cb)
export(colpal.cont)
export(colpal.corpid)
export(colpal.histone)
export(colpal.histone.ihec)
export(colpal.iwh.cb01)
export(colpal.miniblaze)
export(colpal.mu.cat)
export(colpal.nature)
export(colpal.solarextra)
export(colpals.games)
export(colpals.topo)
export(combinationList)
export(containsHistoneModStr)
export(countPairwiseOverlaps)
export(create.densityScatter)
export(df2granges)
export(diagDivCellHeatmap)
export(diagDivHeatmap)
export(dist.correlation)
export(downloadLolaDbs)
export(get.encode.cell.table)
export(getAaPosFromHistoneModStr)
export(getAaTypeFromHistoneModStr)
export(getAnnotGrl.gencode)
export(getAssocTestRes.pca)
export(getCellTypesFromLolaDb)
export(getClusteringDendrogram)
export(getColorFun)
export(getConfig)
export(getDimRedCoords.mds)
export(getDimRedCoords.pca)
export(getDimRedCoords.tsne)
export(getDimRedCoords.umap)
export(getDimRedPlot)
export(getGeneAnnotMap)
export(getGenomeGr)
export(getGenomeObject)
export(getHashString)
export(getHistoneFromHistoneModStr)
export(getModFromHistoneModStr)
export(getNamesFromLolaDb)
export(getPointDensity)
export(getRegionSet)
export(getRelatedAnaDirFromConfig)
export(getSeqlengths4assembly)
export(getTargetFromLolaDb)
export(getTilingRegions)
export(getTxDb.gencode)
export(ggAutoColorScale)
export(ggMessagePlot)
export(ggplot2.distr)
export(ggplot2.heatmap)
export(ggsave4doc)
export(ggtemp)
export(goEnrichment)
export(grGeneAnnot)
export(grLiftOver)
export(grSignedDistance)
export(grTile)
export(granges2bed)
export(granges2bed.igv)
export(granges2igv)
export(indicesInList)
export(kde.plot.matrix)
export(kde.plot.simple)
export(loadLolaDbs)
export(loadRnBeadsAnalysis)
export(lolaBarPlot)
export(lolaBoxPlotPerTarget)
export(lolaRegionSetHeatmap)
export(lolaVolcanoPlot)
export(makeTrans)
export(matchHistoneModStr)
export(normalize.str)
export(normalizeHistoneModStr)
export(normalizePercentile)
export(normalizeRank)
export(pairsDensCor)
export(parse.cl.args)
export(parse.encode.cv.file)
export(pdftemp)
export(plotAllDimRed)
export(plotColpal)
export(plotCorPhm)
export(plotDimRed)
export(plotFisherTest)
export(pngtemp)
export(randomGroupedHeatmap)
export(readTab)
export(reloadPackage)
export(rowTtest)
export(runLOLA_list)
export(scatter.twogroups)
export(setGenomeProps)
export(sortGr)
export(strTrim)
export(summarizeSetOverlap)
export(testAssoc)
export(textSearch)
export(theme_nogrid)
export(umapParamGridReport)
export(underscore2camel)
export(unloadPackage)
export(writeTab)
import(GenomeInfoDb)
import(GenomicRanges)
import(ggplot2)
import(muLogR)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)