batch_normalization uses avgscore column for the global reference distributions. Need to carry over avg_method (e.g. rep_weighted) to match the individual experiments
Final combined stats are also using avgscore, which may not be consistent with the selected score column from individual experiments. _build_final_batch_stats() calls calculate_summary_stats(..., "avgscore") at batch_normalization.py (line 88)
batch_normalization uses avgscore column for the global reference distributions. Need to carry over avg_method (e.g. rep_weighted) to match the individual experiments
Final combined stats are also using avgscore, which may not be consistent with the selected score column from individual experiments. _build_final_batch_stats() calls calculate_summary_stats(..., "avgscore") at batch_normalization.py (line 88)