DESCRIPTION

Package: PartMI
Title: Part Mutual Information for Direct Association Network Inference
Version: 0.0.99
Authors@R: c(
    person("Dany", "Mukesha", , "danymukesha@gmail.com", 
            role = c("aut", "cre"),
           comment = c(ORCID = "0009-0001-9514-751X")),
    person("Zhao", "et al.", role = "ctb", comment = "Original PMI method")
  )
Description: Implements Part Mutual Information (PMI) for inferring direct 
    associations in biological networks. PMI extends mutual information by 
    conditioning on background variables, removing indirect dependencies and 
    reducing false-positive edges in network reconstruction. Suitable for gene 
    regulatory network inference from high-throughput expression data. 
    Includes binning-based and k-nearest-neighbor estimators for both mutual 
    information (MI) and part mutual information (PMI/CMI).
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports:
    stats
Suggests:
    testthat (>= 3.0.0),
    knitr,
    rmarkdown,
    igraph
VignetteBuilder: knitr
NeedsCompilation: no
URL: https://github.com/danymukesha/PartMI
BugReports: https://github.com/danymukesha/PartMI/issues