flaskpipe/04save.sh at master · danielgruen/flaskpipe · GitHub

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#!/bin/bash


if [ $# -ne 2 ]
then
 echo "syntax: $0 ID FLASKPIPE_DIR"
 exit 1
fi

source $2/config.rc

echo "04SAVE..................."

src=$WORK/fp_${RUN}_$1/${RUN}

dest=$SAVEDIR/${RUN}_$1
mkdir -p $dest

# save Poisson-sampled tracer catalogs
echo cp $src/catalog.fits $dest
cp $src/catalog.fits $dest

# save lensing maps after masking / zipping
for i in $src/kappa-gamma-f?z?.fits
do
echo python $PREFIX/mask_maps.py $i $PREFIX/$MASK 3 $dest/`basename $i .fits`.fits.gz
python $PREFIX/mask_maps.py $i $PREFIX/$MASK 3 $dest/`basename $i .fits`.fits.gz
done
for i in $src/map-f?z?.fits
do
echo python $PREFIX/mask_maps.py $i $PREFIX/$MASK 1 $dest/`basename $i .fits`.fits.gz
python $PREFIX/mask_maps.py $i $PREFIX/$MASK 1 $dest/`basename $i .fits`.fits.gz
done

# zip whichever fits might not be zipped yet
for i in $dest/*.fits
do
  echo gzip $i
  gzip $i
done

cp $src/pofn*.tab $dest
cp $src/gammat*.tab $dest
cp $src/trough*.fits $dest
cp $src/../pofn*.tab $dest
cp $src/../gammat*.tab $dest
cp $src/../trough*.fits $dest

# clean up scratch directory
echo rm -rf $WORK/fp_${RUN}_$1/
rm -rf $WORK/fp_${RUN}_$1/