Hello, I am running some biolog data uin the dphenome module. When I do dphenome start having already loaded my data I get this error:
(ductape-env) annymais@NNFCB-L0585:~/ductape$ dphenome start
Exception in thread Thread-1:
Traceback (most recent call last):
File "/usr/lib/python3.10/threading.py", line 1016, in _bootstrap_inner
self.run()
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 2566, in run
if not self.calculateParams():
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 2557, in calculateParams
well.calculateParams()
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 211, in calculateParams
from scipy.integrate import trapz
ModuleNotFoundError: No module named 'scipy'
10:47:36 - 1 - Calculating parameters
Calculating parameters
1% [=------------------------------------------------------------------------------------------------------------------------------------------------]
Item 1 on 96 total 10:47:36 - Parameters extraction not yet performed!
Traceback (most recent call last):
File "/usr/local/bin/dphenome", line 654, in
ret = options.func(options, wdir, project)
File "/usr/local/bin/dphenome", line 95, in dstart
if not doClusterPhenome(project, save_fig_clusters=options.f,
File "/usr/local/bin/dphenome", line 368, in doClusterPhenome
biolog.addWells(wells, clustered=True, replace=True)
File "/usr/local/lib/python3.10/dist-packages/ductape/storage/SQLite/database.py", line 3712, in addWells
raise Exception('Parameters extraction not yet performed!')
Exception: Parameters extraction not yet performed!
Hello, I am running some biolog data uin the dphenome module. When I do dphenome start having already loaded my data I get this error:
(ductape-env) annymais@NNFCB-L0585:~/ductape$ dphenome start
Exception in thread Thread-1:
Traceback (most recent call last):
File "/usr/lib/python3.10/threading.py", line 1016, in _bootstrap_inner
self.run()
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 2566, in run
if not self.calculateParams():
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 2557, in calculateParams
well.calculateParams()
File "/usr/local/lib/python3.10/dist-packages/ductape/phenome/biolog.py", line 211, in calculateParams
from scipy.integrate import trapz
ModuleNotFoundError: No module named 'scipy'
10:47:36 - 1 - Calculating parameters
Calculating parameters
1% [=------------------------------------------------------------------------------------------------------------------------------------------------]
Item 1 on 96 total 10:47:36 - Parameters extraction not yet performed!
Traceback (most recent call last):
File "/usr/local/bin/dphenome", line 654, in
ret = options.func(options, wdir, project)
File "/usr/local/bin/dphenome", line 95, in dstart
if not doClusterPhenome(project, save_fig_clusters=options.f,
File "/usr/local/bin/dphenome", line 368, in doClusterPhenome
biolog.addWells(wells, clustered=True, replace=True)
File "/usr/local/lib/python3.10/dist-packages/ductape/storage/SQLite/database.py", line 3712, in addWells
raise Exception('Parameters extraction not yet performed!')
Exception: Parameters extraction not yet performed!