Genius is not compiled with XML VTK support, skip VTK export...

[pinkchalk]

I have installed Genius open source on my Ubuntu 13.10.
While compiling any input test file genius gives an error

"Genius is not compiled with XML VTK support, skip VTK export..."

and hence no vtk files are generated. I have vtk 5.4.2 installed on my system and I am pretty sure that I had specified the correct paths while building Genius.

[lutherthecat]

Please see my install note:
https://github.com/lutherthecat/Genius-TCAD-Open/blob/2b7f74b44ce11c81118f487186ed3e13111b3b6d/myinstall.txt

This version still uses waf. Later version use cmake instead on my fork.

[pinkchalk]

Oh, I figured it out. It was to do with specifying the VTK_DATA_ROOT while configuring vtk.
Thanks anyways.

[lutherthecat]

Sounds good. With my instructions, it is possible to avoid compiling vtk.

[pinkchalk]

Great, I'll surely have a look at it.
However, can you please tell me how to add -fPIC to CFLAGS while configuring vtk.
There is this silly error I'm getting

/usr/bin/ld: /usr/local/lib/vtk-5.4/libvtkIO.a(vtkXMLUnstructuredGridWriter.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/vtk-5.4/libvtkIO.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status

Hoping to hear from you soon.
Regards

[lutherthecat]

Look at setting CMAKE_CXX_FLAGS and CMAKE_C_FLAGS in your CMakeCache.txt. According to this: http://vtk.1045678.n5.nabble.com/Compile-and-build-VTK-with-shared-libraries-enabled-td5721521.html
you may be able to set BUILD_SHARED_LIBS=ON

[pinkchalk]

Thanks buddy. My first day on Git and issues have started to solve faster.
Regards

[lutherthecat]

You're welcome. Sounds like you are well on your way. Any issues with cmake or vtk are best handled on their mailing lists.

[pinkchalk]

Another error now,

/usr/bin/ld: warning: libvtkNetCDF.so.5.4, needed by /usr/local/lib/vtk-5.4/libvtkIO.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkmetaio.so.5.4, needed by /usr/local/lib/vtk-5.4/libvtkIO.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtksqlite.so.5.4, needed by /usr/local/lib/vtk-5.4/libvtkIO.so, not found (try using -rpath or -rpath-link)
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaImage::HeaderSize() const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaImage::Modality() const'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_vara_double' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_sync'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_column_name' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_open'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_close' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_get_att_short'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaImage::ElementToIntensityFunctionOffset() const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_def_var'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_prepare_v2' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_get_vara_schar'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_put_vara_uchar' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_errmsg'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaImage::DimSize(int) const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_get_att_uchar'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_close' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaObject::Position(int) const'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_column_int' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaImage::MetaImage()'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_put_att_double' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_put_vara_double'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_column_count' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_inq'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_errcode' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_finalize'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_att_text' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MET_SystemByteOrderMSB()'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_vara_uchar' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_inq_att'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_open' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaImage::ElementByteOrderFix()'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MET_SizeOfType(vtkmetaio::MET_ValueEnumType, int*)' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_column_bytes'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_att_double' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaImage::ElementToIntensityFunctionSlope() const'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_put_att_text' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaImage::ElementNumberOfChannels() const'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_att_int' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_exec'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_put_att_int' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_inq_dim'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_strerror' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_reset'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_inq_attname' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_inq_var'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_bind_double' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_put_vara_short'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_def_dim' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_column_type'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaImage::ElementDataFileName(char const*)' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_get_att_float'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_column_blob' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_bind_int'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaObject::Position(double const*)' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaObject::CompressedData(bool)'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaObject::NDims() const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_put_vara_int'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_vara_short' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_inq_varid'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_column_double' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_clear_bindings'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_netcdf_nc_get_vara_int' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_create'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_bind_blob' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_sqlite3_column_text'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_bind_text' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_get_vara_float'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaObject::DistanceUnits() const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtkmetaio::MetaObject::AnatomicalOrientationAcronym() const'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaImage::ElementType() const' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_put_vara_float'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtk_sqlite3_step' /usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference tovtk_netcdf_nc_put_vara_schar'
/usr/local/lib/vtk-5.4/libvtkIO.so: undefined reference to vtkmetaio::MetaObject::ElementSpacing(int) const' collect2: error: ld returned 1 exit status Waf: Leaving directory/home/pinkchalk/Downloads/Genius-TCAD-Open-master/build/default'
Build failed
-> task failed (exit status 1):
{task 28798608: cxxprogram ANN.cpp.0.o,bd_fix_rad_search.cpp.0.o,bd_pr_search.cpp.0.o,bd_search.cpp.0.o,bd_tree.cpp.0.o,brute.cpp.0.o,kd_dump.cpp.0.o,kd_fix_rad_search.cpp.0.o,kd_pr_search.cpp.0.o,kd_search.cpp.0.o,kd_split.cpp.0.o,kd_tree.cpp.0.o,kd_util.cpp.0.o,perf.cpp.0.o,csa.cc.1.o,svd.c.1.o,expr.cc.1.o,expr_datalist.cc.1.o,expr_except.cc.1.o,expr_func.cc.1.o,expr_funclist.cc.1.o,expr_node.cc.1.o,expr_parser.cc.1.o,expr_vallist.cc.1.o,schur_solver.cc.1.o,spice_ckt.cc.1.o,tif3d.cc.1.o,UFconfig.c.1.o,amd_1.c.1.o,amd_2.c.1.o,amd_aat.c.1.o,amd_control.c.1.o,amd_defaults.c.1.o,amd_dump.c.1.o,amd_global.c.1.o,amd_info.c.1.o,amd_order.c.1.o,amd_post_tree.c.1.o,amd_postorder.c.1.o,amd_preprocess.c.1.o,amd_valid.c.1.o,btf_maxtrans.c.1.o,btf_order.c.1.o,btf_strongcomp.c.1.o,colamd.c.1.o,colamd_global.c.1.o,klu.c.1.o,klu_analyze.c.1.o,klu_analyze_given.c.1.o,klu_defaults.c.1.o,klu_diagnostics.c.1.o,klu_dump.c.1.o,klu_extract.c.1.o,klu_factor.c.1.o,klu_free_numeric.c.1.o,klu_free_symbolic.c.1.o,klu_kernel.c.1.o,klu_memory.c.1.o,klu_refactor.c.1.o,klu_scale.c.1.o,klu_solve.c.1.o,klu_sort.c.1.o,klu_tsolve.c.1.o,MXMLUtil.cpp.1.o,mxml-attr.c.1.o,mxml-entity.c.1.o,mxml-file.c.1.o,mxml-index.c.1.o,mxml-node.c.1.o,mxml-private.c.1.o,mxml-search.c.1.o,mxml-set.c.1.o,mxml-string.c.1.o,delaunay.cc.1.o,istack.cc.1.o,lpi.cc.1.o,spline.cc.1.o,triangle.c.1.o,tif_tool.cc.2.o,medici.cc.1.o,silvaco.cc.1.o,stanford.cc.1.o,suprem.cc.1.o,dfise.cc.2.o,dfise_grid.cc.2.o,trex.c.1.o,dof_object.cc.2.o,genius_env.cc.2.o,log.cc.2.o,perf_log.cc.2.o,boundary_condition.cc.2.o,boundary_condition_collector.cc.2.o,boundary_mos_channel_elem.cc.2.o,boundary_nearest_point.cc.2.o,fe.cc.2.o,fe_base.cc.2.o,fe_boundary.cc.2.o,fe_hermite.cc.2.o,fe_hermite_shape_1D.cc.2.o,fe_hermite_shape_2D.cc.2.o,fe_hermite_shape_3D.cc.2.o,fe_lagrange.cc.2.o,fe_lagrange_shape_0D.cc.2.o,fe_lagrange_shape_1D.cc.2.o,fe_lagrange_shape_2D.cc.2.o,fe_lagrange_shape_3D.cc.2.o,fe_map.cc.2.o,number_lookups.cc.2.o,edge.cc.2.o,edge_edge2.cc.2.o,edge_edge2_fvm.cc.2.o,elem.cc.2.o,elem_refinement.cc.2.o,face_cy_quad4_fvm.cc.2.o,face_cy_tri3_fvm.cc.2.o,face_quad.cc.2.o,face_quad4.cc.2.o,face_quad4_fvm.cc.2.o,face_tri.cc.2.o,face_tri3.cc.2.o,face_tri3_fvm.cc.2.o,node_elem.cc.2.o,plane.cc.2.o,polygon.cc.2.o,polygon_usample.cc.2.o,sphere.cc.2.o,interpolation_1d_linear.cc.2.o,interpolation_1d_spline.cc.2.o,interpolation_2d_csa.cc.2.o,interpolation_2d_nn.cc.2.o,interpolation_3d_nbtet.cc.2.o,interpolation_3d_qshep.cc.2.o,adolc_init.cc.2.o,dense_matrix.cc.2.o,dense_matrix_base.cc.2.o,dense_vector.cc.2.o,dense_vector_base.cc.2.o,expr_evaluate.cc.2.o,numeric_vector.cc.2.o,petsc_matrix.cc.2.o,petsc_type.cc.2.o,petsc_utils.cc.2.o,petsc_vector.cc.2.o,sparse_matrix.cc.2.o,symbolic_matrix.cc.2.o,type_tensor.cc.2.o,type_vector.cc.2.o,boundary_info.cc.2.o,boundary_mesh.cc.2.o,mesh_base.cc.2.o,mesh_communication.cc.2.o,mesh_modification.cc.2.o,mesh_refinement.cc.2.o,mesh_refinement_flagging.cc.2.o,mesh_refinement_smoothing.cc.2.o,mesh_tools.cc.2.o,serial_mesh.cc.2.o,serial_mesh_iterators.cc.2.o,unstructured_mesh.cc.2.o,mesh_generation.cc.2.o,mesh_generation_quad4.cc.2.o,mesh_generation_tri3.cc.2.o,file_include.cc.2.o,parser.cc.2.o,parser_card.cc.2.o,parser_parameter.cc.2.o,pattern.cc.2.o,pattern_xml.cc.2.o,linear_partitioner.cc.2.o,metis_partitioner.cc.2.o,parmetis_partitioner.cc.2.o,partitioner.cc.2.o,quadrature.cc.2.o,quadrature_build.cc.2.o,quadrature_conical.cc.2.o,quadrature_conical_2D.cc.2.o,quadrature_conical_3D.cc.2.o,quadrature_gauss.cc.2.o,quadrature_gauss_1D.cc.2.o,quadrature_gauss_2D.cc.2.o,quadrature_gauss_3D.cc.2.o,quadrature_jacobi_1D.cc.2.o,cgns_io.cc.2.o,conductor_region.cc.2.o,control.cc.2.o,dfise_io.cc.2.o,external_circuit.cc.2.o,external_circuit_pi.cc.2.o,external_circuit_rcl.cc.2.o,external_circuit_rct.cc.2.o,fvm_cell_data.cc.2.o,fvm_node_data.cc.2.o,fvm_node_info.cc.2.o,gdml_io.cc.2.o,insulator_region.cc.2.o,location_io.cc.2.o,pml_region.cc.2.o,resistance_region.cc.2.o,semiconductor_region.cc.2.o,simulation_region.cc.2.o,simulation_system.cc.2.o,solution_define.cc.2.o,stanford_io.cc.2.o,tif3d_io.cc.2.o,tif_io.cc.2.o,vacuum_region.cc.2.o,variable_define.cc.2.o,vtk_io.cc.2.o,ddm1.cc.2.o,ddm1_boundary_ei_interface.cc.2.o,ddm1_boundary_float_metal.cc.2.o,ddm1_boundary_gate.cc.2.o,ddm1_boundary_hetero_interface.cc.2.o,ddm1_boundary_homo_interface.cc.2.o,ddm1_boundary_ii_interface.cc.2.o,ddm1_boundary_ir_interface.cc.2.o,ddm1_boundary_is_interface.cc.2.o,ddm1_boundary_ohmic.cc.2.o,ddm1_boundary_resistance_ohmic.cc.2.o,ddm1_boundary_resistance_schottky.cc.2.o,ddm1_boundary_rr_interface.cc.2.o,ddm1_boundary_schottky.cc.2.o,ddm1_boundary_simple_gate.cc.2.o,ddm1_boundary_solderpad.cc.2.o,ddm1_conductor.cc.2.o,ddm1_conductor_hanging_node.cc.2.o,ddm1_insulator.cc.2.o,ddm1_insulator_hanging_node.cc.2.o,ddm1_resistance.cc.2.o,ddm1_resistance_hanging_node.cc.2.o,ddm1_semiconductor.cc.2.o,ddm1_semiconductor_hanging_node.cc.2.o,ddm1r.cc.2.o,ddm1r_boundary_ir_interface.cc.2.o,ddm1r_boundary_resistance_ohmic.cc.2.o,ddm1r_boundary_resistance_schottky.cc.2.o,ddm1r_boundary_rr_interface.cc.2.o,ddm1r_boundary_solderpad.cc.2.o,ddm1r_resistance.cc.2.o,ddm1r_resistance_hanging_node.cc.2.o,ddm2.cc.2.o,ddm2_boundary_ei_interface.cc.2.o,ddm2_boundary_ev.cc.2.o,ddm2_boundary_float_metal.cc.2.o,ddm2_boundary_gate.cc.2.o,ddm2_boundary_hetero_interface.cc.2.o,ddm2_boundary_homo_interface.cc.2.o,ddm2_boundary_ii_interface.cc.2.o,ddm2_boundary_ir_interface.cc.2.o,ddm2_boundary_is_interface.cc.2.o,ddm2_boundary_iv.cc.2.o,ddm2_boundary_neumann.cc.2.o,ddm2_boundary_ohmic.cc.2.o,ddm2_boundary_resistance_ohmic.cc.2.o,ddm2_boundary_resistance_schottky.cc.2.o,ddm2_boundary_rr_interface.cc.2.o,ddm2_boundary_schottky.cc.2.o,ddm2_boundary_simple_gate.cc.2.o,ddm2_boundary_solderpad.cc.2.o,ddm2_conductor.cc.2.o,ddm2_conductor_hanging_node.cc.2.o,ddm2_insulator.cc.2.o,ddm2_insulator_hanging_node.cc.2.o,ddm2_resistance.cc.2.o,ddm2_resistance_hanging_node.cc.2.o,ddm2_semiconductor.cc.2.o,ddm2_semiconductor_hanging_node.cc.2.o,ddm_ac.cc.2.o,ddmac_boundary_ei_interface.cc.2.o,ddmac_boundary_ev.cc.2.o,ddmac_boundary_float_metal.cc.2.o,ddmac_boundary_gate.cc.2.o,ddmac_boundary_hetero_interface.cc.2.o,ddmac_boundary_homo_interface.cc.2.o,ddmac_boundary_ii_interface.cc.2.o,ddmac_boundary_ir_interface.cc.2.o,ddmac_boundary_is_interface.cc.2.o,ddmac_boundary_iv.cc.2.o,ddmac_boundary_neumann.cc.2.o,ddmac_boundary_ohmic.cc.2.o,ddmac_boundary_resistance_ohmic.cc.2.o,ddmac_boundary_rr_interface.cc.2.o,ddmac_boundary_schottky.cc.2.o,ddmac_boundary_simple_gate.cc.2.o,ddmac_boundary_solderpad.cc.2.o,ddmac_conductor.cc.2.o,ddmac_insulator.cc.2.o,ddmac_resistance.cc.2.o,ddmac_semiconductor.cc.2.o,charge_integral.cc.2.o,ddm_solver.cc.2.o,gate_current.cc.2.o,inter_connect.cc.2.o,mixA_solver.cc.2.o,mix_inter_connect.cc.2.o,mix_solver.cc.2.o,mob_semiconductor.cc.2.o,dg.cc.2.o,dg_boundary_homo_interface.cc.2.o,dg_boundary_is_interface.cc.2.o,dg_boundary_ohmic.cc.2.o,dg_boundary_resistance_ohmic.cc.2.o,dg_conductor.cc.2.o,dg_insulator.cc.2.o,dg_resistance.cc.2.o,dg_semiconductor.cc.2.o,doping_analytic.cc.2.o,doping_fun.cc.2.o,ebm3.cc.2.o,ebm3_boundary_ei_interface.cc.2.o,ebm3_boundary_ev.cc.2.o,ebm3_boundary_float_metal.cc.2.o,ebm3_boundary_gate.cc.2.o,ebm3_boundary_hetero_interface.cc.2.o,ebm3_boundary_homo_interface.cc.2.o,ebm3_boundary_ii_interface.cc.2.o,ebm3_boundary_ir_interface.cc.2.o,ebm3_boundary_is_interface.cc.2.o,ebm3_boundary_iv.cc.2.o,ebm3_boundary_neumann.cc.2.o,ebm3_boundary_ohmic.cc.2.o,ebm3_boundary_resistance_ohmic.cc.2.o,ebm3_boundary_resistance_schottky.cc.2.o,ebm3_boundary_rr_interface.cc.2.o,ebm3_boundary_schottky.cc.2.o,ebm3_boundary_simple_gate.cc.2.o,ebm3_boundary_solderpad.cc.2.o,ebm3_conductor.cc.2.o,ebm3_conductor_hanging_node.cc.2.o,ebm3_insulator.cc.2.o,ebm3_insulator_hanging_node.cc.2.o,ebm3_resistance.cc.2.o,ebm3_resistance_hanging_node.cc.2.o,ebm3_semiconductor.cc.2.o,ebm3_semiconductor_hanging_node.cc.2.o,ebm3_semiconductor_jacob.cc.2.o,emfem2d.cc.2.o,fem_linear_solver.cc.2.o,fem_pde_solver.cc.2.o,fvm_explicit_solver.cc.2.o,fvm_linear_solver.cc.2.o,fvm_nonlinear_solver.cc.2.o,fvm_pde_solver.cc.2.o,hall.cc.2.o,hall_conductor.cc.2.o,hall_insulator.cc.2.o,hall_resistance.cc.2.o,hall_semiconductor.cc.2.o,hdm.cc.2.o,hdm_boundary_neumann.cc.2.o,hdm_boundary_ohmic.cc.2.o,hdm_semiconductor.cc.2.o,linear_poisson.cc.2.o,linear_poisson_boundary_ohmic.cc.2.o,linear_poisson_conductor.cc.2.o,linear_poisson_insulator.cc.2.o,linear_poisson_semiconductor.cc.2.o,mix1.cc.2.o,mix1_boundary_gate.cc.2.o,mix1_boundary_ohmic.cc.2.o,mix1_boundary_schottky.cc.2.o,mix1_boundary_solderpad.cc.2.o,mixA1.cc.2.o,mixA1_boundary_gate.cc.2.o,mixA1_boundary_ohmic.cc.2.o,mixA1_boundary_schottky.cc.2.o,mixA1_boundary_solderpad.cc.2.o,mixA2.cc.2.o,mixA2_boundary_gate.cc.2.o,mixA2_boundary_ohmic.cc.2.o,mixA2_boundary_schottky.cc.2.o,mixA2_boundary_solderpad.cc.2.o,mixA3.cc.2.o,mixA3_boundary_gate.cc.2.o,mixA3_boundary_ohmic.cc.2.o,mixA3_boundary_schottky.cc.2.o,mixA3_boundary_solderpad.cc.2.o,mole_analytic.cc.2.o,poisson.cc.2.o,poisson_boundary_ei_interface.cc.2.o,poisson_boundary_float_metal.cc.2.o,poisson_boundary_gate.cc.2.o,poisson_boundary_hetero_interface.cc.2.o,poisson_boundary_homo_interface.cc.2.o,poisson_boundary_ii_interface.cc.2.o,poisson_boundary_ir_interface.cc.2.o,poisson_boundary_is_interface.cc.2.o,poisson_boundary_ohmic.cc.2.o,poisson_boundary_resistance_ohmic.cc.2.o,poisson_boundary_resistance_schottky.cc.2.o,poisson_boundary_rr_interface.cc.2.o,poisson_boundary_schottky.cc.2.o,poisson_boundary_simple_gate.cc.2.o,poisson_boundary_solderpad.cc.2.o,poisson_conductor.cc.2.o,poisson_conductor_hanging_node.cc.2.o,poisson_insulator.cc.2.o,poisson_insulator_hanging_node.cc.2.o,poisson_resistance.cc.2.o,poisson_resistance_hanging_node.cc.2.o,poisson_semiconductor.cc.2.o,poisson_semiconductor_hanging_node.cc.2.o,light_thread.cc.2.o,object_tree.cc.2.o,ray_tracing.cc.2.o,solver_base.cc.2.o,solver_specify.cc.2.o,stress_solver.cc.2.o,electrical_source.cc.2.o,field_source.cc.2.o,isource.cc.2.o,light_lenses.cc.2.o,light_source.cc.2.o,particle_source.cc.2.o,vsource.cc.2.o,waveform.cc.2.o,dose_rate.cc.2.o,error_vector.cc.2.o,extend_to_3d.cc.2.o,location_maps.cc.2.o,mat_analysis.cc.2.o,monot_cubic_interpolator.cc.2.o,nearest_node_locator.cc.2.o,octree.cc.2.o,point_locator_base.cc.2.o,point_locator_list.cc.2.o,point_locator_tree.cc.2.o,show_mesh_2d.cc.2.o,statistics.cc.2.o,surface_locator_base.cc.2.o,surface_locator_hub.cc.2.o,surface_locator_list.cc.2.o,surface_locator_sphere.cc.2.o,sync_file.cc.2.o,tree.cc.2.o,tree_node.cc.2.o,PMI.cc.2.o,material.cc.2.o,material_define.cc.2.o,physical_unit.cc.2.o,dlhook.cc.1.o,main.cc.3.o -> genius.LINUX}
['/usr/bin/g++', 'src/contrib/ann/ANN.cpp.0.o', 'src/contrib/ann/bd_fix_rad_search.cpp.0.o', 'src/contrib/ann/bd_pr_search.cpp.0.o', 'src/contrib/ann/bd_search.cpp.0.o', 'src/contrib/ann/bd_tree.cpp.0.o', 'src/contrib/ann/brute.cpp.0.o', 'src/contrib/ann/kd_dump.cpp.0.o', 'src/contrib/ann/kd_fix_rad_search.cpp.0.o', 'src/contrib/ann/kd_pr_search.cpp.0.o', 'src/contrib/ann/kd_search.cpp.0.o', 'src/contrib/ann/kd_split.cpp.0.o', 'src/contrib/ann/kd_tree.cpp.0.o', 'src/contrib/ann/kd_util.cpp.0.o', 'src/contrib/ann/perf.cpp.0.o', 'src/contrib/csabathy/csa.cc.1.o', 'src/contrib/csabathy/svd.c.1.o', 'src/contrib/expreval/expr.cc.1.o', 'src/contrib/expreval/expr_datalist.cc.1.o', 'src/contrib/expreval/expr_except.cc.1.o', 'src/contrib/expreval/expr_func.cc.1.o', 'src/contrib/expreval/expr_funclist.cc.1.o', 'src/contrib/expreval/expr_node.cc.1.o', 'src/contrib/expreval/expr_parser.cc.1.o', 'src/contrib/expreval/expr_vallist.cc.1.o', 'src/contrib/spice/schur_solver.cc.1.o', 'src/contrib/spice/spice_ckt.cc.1.o', 'src/contrib/tif3d/tif3d.cc.1.o', 'src/contrib/klu/UFconfig.c.1.o', 'src/contrib/klu/amd_1.c.1.o', 'src/contrib/klu/amd_2.c.1.o', 'src/contrib/klu/amd_aat.c.1.o', 'src/contrib/klu/amd_control.c.1.o', 'src/contrib/klu/amd_defaults.c.1.o', 'src/contrib/klu/amd_dump.c.1.o', 'src/contrib/klu/amd_global.c.1.o', 'src/contrib/klu/amd_info.c.1.o', 'src/contrib/klu/amd_order.c.1.o', 'src/contrib/klu/amd_post_tree.c.1.o', 'src/contrib/klu/amd_postorder.c.1.o', 'src/contrib/klu/amd_preprocess.c.1.o', 'src/contrib/klu/amd_valid.c.1.o', 'src/contrib/klu/btf_maxtrans.c.1.o', 'src/contrib/klu/btf_order.c.1.o', 'src/contrib/klu/btf_strongcomp.c.1.o', 'src/contrib/klu/colamd.c.1.o', 'src/contrib/klu/colamd_global.c.1.o', 'src/contrib/klu/klu.c.1.o', 'src/contrib/klu/klu_analyze.c.1.o', 'src/contrib/klu/klu_analyze_given.c.1.o', 'src/contrib/klu/klu_defaults.c.1.o', 'src/contrib/klu/klu_diagnostics.c.1.o', 'src/contrib/klu/klu_dump.c.1.o', 'src/contrib/klu/klu_extract.c.1.o', 'src/contrib/klu/klu_factor.c.1.o', 'src/contrib/klu/klu_free_numeric.c.1.o', 'src/contrib/klu/klu_free_symbolic.c.1.o', 'src/contrib/klu/klu_kernel.c.1.o', 'src/contrib/klu/klu_memory.c.1.o', 'src/contrib/klu/klu_refactor.c.1.o', 'src/contrib/klu/klu_scale.c.1.o', 'src/contrib/klu/klu_solve.c.1.o', 'src/contrib/klu/klu_sort.c.1.o', 'src/contrib/klu/klu_tsolve.c.1.o', 'src/contrib/mxml/MXMLUtil.cpp.1.o', 'src/contrib/mxml/mxml-attr.c.1.o', 'src/contrib/mxml/mxml-entity.c.1.o', 'src/contrib/mxml/mxml-file.c.1.o', 'src/contrib/mxml/mxml-index.c.1.o', 'src/contrib/mxml/mxml-node.c.1.o', 'src/contrib/mxml/mxml-private.c.1.o', 'src/contrib/mxml/mxml-search.c.1.o', 'src/contrib/mxml/mxml-set.c.1.o', 'src/contrib/mxml/mxml-string.c.1.o', 'src/contrib/nn/delaunay.cc.1.o', 'src/contrib/nn/istack.cc.1.o', 'src/contrib/nn/lpi.cc.1.o', 'src/contrib/spline/spline.cc.1.o', 'src/contrib/triangle/triangle.c.1.o', 'src/contrib/tif/tif_tool.cc.2.o', 'src/contrib/stanford/medici.cc.1.o', 'src/contrib/stanford/silvaco.cc.1.o', 'src/contrib/stanford/stanford.cc.1.o', 'src/contrib/stanford/suprem.cc.1.o', 'src/contrib/dfise/dfise.cc.2.o', 'src/contrib/dfise/dfise_grid.cc.2.o', 'src/contrib/trex/trex.c.1.o', 'src/base/dof_object.cc.2.o', 'src/base/genius_env.cc.2.o', 'src/base/log.cc.2.o', 'src/base/perf_log.cc.2.o', 'src/bc/boundary_condition.cc.2.o', 'src/bc/boundary_condition_collector.cc.2.o', 'src/bc/boundary_mos_channel_elem.cc.2.o', 'src/bc/boundary_nearest_point.cc.2.o', 'src/fe/fe.cc.2.o', 'src/fe/fe_base.cc.2.o', 'src/fe/fe_boundary.cc.2.o', 'src/fe/fe_hermite.cc.2.o', 'src/fe/fe_hermite_shape_1D.cc.2.o', 'src/fe/fe_hermite_shape_2D.cc.2.o', 'src/fe/fe_hermite_shape_3D.cc.2.o', 'src/fe/fe_lagrange.cc.2.o', 'src/fe/fe_lagrange_shape_0D.cc.2.o', 'src/fe/fe_lagrange_shape_1D.cc.2.o', 'src/fe/fe_lagrange_shape_2D.cc.2.o', 'src/fe/fe_lagrange_shape_3D.cc.2.o', 'src/fe/fe_map.cc.2.o', 'src/fe/number_lookups.cc.2.o', 'src/geom/edge.cc.2.o', 'src/geom/edge_edge2.cc.2.o', 'src/geom/edge_edge2_fvm.cc.2.o', 'src/geom/elem.cc.2.o', 'src/geom/elem_refinement.cc.2.o', 'src/geom/face_cy_quad4_fvm.cc.2.o', 'src/geom/face_cy_tri3_fvm.cc.2.o', 'src/geom/face_quad.cc.2.o', 'src/geom/face_quad4.cc.2.o', 'src/geom/face_quad4_fvm.cc.2.o', 'src/geom/face_tri.cc.2.o', 'src/geom/face_tri3.cc.2.o', 'src/geom/face_tri3_fvm.cc.2.o', 'src/geom/node_elem.cc.2.o', 'src/geom/plane.cc.2.o', 'src/geom/polygon.cc.2.o', 'src/geom/polygon_usample.cc.2.o', 'src/geom/sphere.cc.2.o', 'src/interpolation/interpolation_1d_linear.cc.2.o', 'src/interpolation/interpolation_1d_spline.cc.2.o', 'src/interpolation/interpolation_2d_csa.cc.2.o', 'src/interpolation/interpolation_2d_nn.cc.2.o', 'src/interpolation/interpolation_3d_nbtet.cc.2.o', 'src/interpolation/interpolation_3d_qshep.cc.2.o', 'src/math/adolc_init.cc.2.o', 'src/math/dense_matrix.cc.2.o', 'src/math/dense_matrix_base.cc.2.o', 'src/math/dense_vector.cc.2.o', 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'src/solver/ddm1r/ddm1r_boundary_ir_interface.cc.2.o', 'src/solver/ddm1r/ddm1r_boundary_resistance_ohmic.cc.2.o', 'src/solver/ddm1r/ddm1r_boundary_resistance_schottky.cc.2.o', 'src/solver/ddm1r/ddm1r_boundary_rr_interface.cc.2.o', 'src/solver/ddm1r/ddm1r_boundary_solderpad.cc.2.o', 'src/solver/ddm1r/ddm1r_resistance.cc.2.o', 'src/solver/ddm1r/ddm1r_resistance_hanging_node.cc.2.o', 'src/solver/ddm2/ddm2.cc.2.o', 'src/solver/ddm2/ddm2_boundary_ei_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_ev.cc.2.o', 'src/solver/ddm2/ddm2_boundary_float_metal.cc.2.o', 'src/solver/ddm2/ddm2_boundary_gate.cc.2.o', 'src/solver/ddm2/ddm2_boundary_hetero_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_homo_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_ii_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_ir_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_is_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_iv.cc.2.o', 'src/solver/ddm2/ddm2_boundary_neumann.cc.2.o', 'src/solver/ddm2/ddm2_boundary_ohmic.cc.2.o', 'src/solver/ddm2/ddm2_boundary_resistance_ohmic.cc.2.o', 'src/solver/ddm2/ddm2_boundary_resistance_schottky.cc.2.o', 'src/solver/ddm2/ddm2_boundary_rr_interface.cc.2.o', 'src/solver/ddm2/ddm2_boundary_schottky.cc.2.o', 'src/solver/ddm2/ddm2_boundary_simple_gate.cc.2.o', 'src/solver/ddm2/ddm2_boundary_solderpad.cc.2.o', 'src/solver/ddm2/ddm2_conductor.cc.2.o', 'src/solver/ddm2/ddm2_conductor_hanging_node.cc.2.o', 'src/solver/ddm2/ddm2_insulator.cc.2.o', 'src/solver/ddm2/ddm2_insulator_hanging_node.cc.2.o', 'src/solver/ddm2/ddm2_resistance.cc.2.o', 'src/solver/ddm2/ddm2_resistance_hanging_node.cc.2.o', 'src/solver/ddm2/ddm2_semiconductor.cc.2.o', 'src/solver/ddm2/ddm2_semiconductor_hanging_node.cc.2.o', 'src/solver/ddm_ac/ddm_ac.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_ei_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_ev.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_float_metal.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_gate.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_hetero_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_homo_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_ii_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_ir_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_is_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_iv.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_neumann.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_ohmic.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_resistance_ohmic.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_rr_interface.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_schottky.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_simple_gate.cc.2.o', 'src/solver/ddm_ac/ddmac_boundary_solderpad.cc.2.o', 'src/solver/ddm_ac/ddmac_conductor.cc.2.o', 'src/solver/ddm_ac/ddmac_insulator.cc.2.o', 'src/solver/ddm_ac/ddmac_resistance.cc.2.o', 'src/solver/ddm_ac/ddmac_semiconductor.cc.2.o', 'src/solver/ddm_common/charge_integral.cc.2.o', 'src/solver/ddm_common/ddm_solver.cc.2.o', 'src/solver/ddm_common/gate_current.cc.2.o', 'src/solver/ddm_common/inter_connect.cc.2.o', 'src/solver/ddm_common/mixA_solver.cc.2.o', 'src/solver/ddm_common/mix_inter_connect.cc.2.o', 'src/solver/ddm_common/mix_solver.cc.2.o', 'src/solver/ddm_common/mob_semiconductor.cc.2.o', 'src/solver/dg/dg.cc.2.o', 'src/solver/dg/dg_boundary_homo_interface.cc.2.o', 'src/solver/dg/dg_boundary_is_interface.cc.2.o', 'src/solver/dg/dg_boundary_ohmic.cc.2.o', 'src/solver/dg/dg_boundary_resistance_ohmic.cc.2.o', 'src/solver/dg/dg_conductor.cc.2.o', 'src/solver/dg/dg_insulator.cc.2.o', 'src/solver/dg/dg_resistance.cc.2.o', 'src/solver/dg/dg_semiconductor.cc.2.o', 'src/solver/doping_analytic/doping_analytic.cc.2.o', 'src/solver/doping_analytic/doping_fun.cc.2.o', 'src/solver/ebm3/ebm3.cc.2.o', 'src/solver/ebm3/ebm3_boundary_ei_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_ev.cc.2.o', 'src/solver/ebm3/ebm3_boundary_float_metal.cc.2.o', 'src/solver/ebm3/ebm3_boundary_gate.cc.2.o', 'src/solver/ebm3/ebm3_boundary_hetero_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_homo_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_ii_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_ir_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_is_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_iv.cc.2.o', 'src/solver/ebm3/ebm3_boundary_neumann.cc.2.o', 'src/solver/ebm3/ebm3_boundary_ohmic.cc.2.o', 'src/solver/ebm3/ebm3_boundary_resistance_ohmic.cc.2.o', 'src/solver/ebm3/ebm3_boundary_resistance_schottky.cc.2.o', 'src/solver/ebm3/ebm3_boundary_rr_interface.cc.2.o', 'src/solver/ebm3/ebm3_boundary_schottky.cc.2.o', 'src/solver/ebm3/ebm3_boundary_simple_gate.cc.2.o', 'src/solver/ebm3/ebm3_boundary_solderpad.cc.2.o', 'src/solver/ebm3/ebm3_conductor.cc.2.o', 'src/solver/ebm3/ebm3_conductor_hanging_node.cc.2.o', 'src/solver/ebm3/ebm3_insulator.cc.2.o', 'src/solver/ebm3/ebm3_insulator_hanging_node.cc.2.o', 'src/solver/ebm3/ebm3_resistance.cc.2.o', 'src/solver/ebm3/ebm3_resistance_hanging_node.cc.2.o', 'src/solver/ebm3/ebm3_semiconductor.cc.2.o', 'src/solver/ebm3/ebm3_semiconductor_hanging_node.cc.2.o', 'src/solver/ebm3/ebm3_semiconductor_jacob.cc.2.o', 'src/solver/emfem2d/emfem2d.cc.2.o', 'src/solver/fem_linear_solver.cc.2.o', 'src/solver/fem_pde_solver.cc.2.o', 'src/solver/fvm_explicit_solver.cc.2.o', 'src/solver/fvm_linear_solver.cc.2.o', 'src/solver/fvm_nonlinear_solver.cc.2.o', 'src/solver/fvm_pde_solver.cc.2.o', 'src/solver/hall/hall.cc.2.o', 'src/solver/hall/hall_conductor.cc.2.o', 'src/solver/hall/hall_insulator.cc.2.o', 'src/solver/hall/hall_resistance.cc.2.o', 'src/solver/hall/hall_semiconductor.cc.2.o', 'src/solver/hdm/hdm.cc.2.o', 'src/solver/hdm/hdm_boundary_neumann.cc.2.o', 'src/solver/hdm/hdm_boundary_ohmic.cc.2.o', 'src/solver/hdm/hdm_semiconductor.cc.2.o', 'src/solver/hdm/linear_poisson.cc.2.o', 'src/solver/hdm/linear_poisson_boundary_ohmic.cc.2.o', 'src/solver/hdm/linear_poisson_conductor.cc.2.o', 'src/solver/hdm/linear_poisson_insulator.cc.2.o', 'src/solver/hdm/linear_poisson_semiconductor.cc.2.o', 'src/solver/mix1/mix1.cc.2.o', 'src/solver/mix1/mix1_boundary_gate.cc.2.o', 'src/solver/mix1/mix1_boundary_ohmic.cc.2.o', 'src/solver/mix1/mix1_boundary_schottky.cc.2.o', 'src/solver/mix1/mix1_boundary_solderpad.cc.2.o', 'src/solver/mixA1/mixA1.cc.2.o', 'src/solver/mixA1/mixA1_boundary_gate.cc.2.o', 'src/solver/mixA1/mixA1_boundary_ohmic.cc.2.o', 'src/solver/mixA1/mixA1_boundary_schottky.cc.2.o', 'src/solver/mixA1/mixA1_boundary_solderpad.cc.2.o', 'src/solver/mixA2/mixA2.cc.2.o', 'src/solver/mixA2/mixA2_boundary_gate.cc.2.o', 'src/solver/mixA2/mixA2_boundary_ohmic.cc.2.o', 'src/solver/mixA2/mixA2_boundary_schottky.cc.2.o', 'src/solver/mixA2/mixA2_boundary_solderpad.cc.2.o', 'src/solver/mixA3/mixA3.cc.2.o', 'src/solver/mixA3/mixA3_boundary_gate.cc.2.o', 'src/solver/mixA3/mixA3_boundary_ohmic.cc.2.o', 'src/solver/mixA3/mixA3_boundary_schottky.cc.2.o', 'src/solver/mixA3/mixA3_boundary_solderpad.cc.2.o', 'src/solver/mole_analytic/mole_analytic.cc.2.o', 'src/solver/poisson/poisson.cc.2.o', 'src/solver/poisson/poisson_boundary_ei_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_float_metal.cc.2.o', 'src/solver/poisson/poisson_boundary_gate.cc.2.o', 'src/solver/poisson/poisson_boundary_hetero_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_homo_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_ii_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_ir_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_is_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_ohmic.cc.2.o', 'src/solver/poisson/poisson_boundary_resistance_ohmic.cc.2.o', 'src/solver/poisson/poisson_boundary_resistance_schottky.cc.2.o', 'src/solver/poisson/poisson_boundary_rr_interface.cc.2.o', 'src/solver/poisson/poisson_boundary_schottky.cc.2.o', 'src/solver/poisson/poisson_boundary_simple_gate.cc.2.o', 'src/solver/poisson/poisson_boundary_solderpad.cc.2.o', 'src/solver/poisson/poisson_conductor.cc.2.o', 'src/solver/poisson/poisson_conductor_hanging_node.cc.2.o', 'src/solver/poisson/poisson_insulator.cc.2.o', 'src/solver/poisson/poisson_insulator_hanging_node.cc.2.o', 'src/solver/poisson/poisson_resistance.cc.2.o', 'src/solver/poisson/poisson_resistance_hanging_node.cc.2.o', 'src/solver/poisson/poisson_semiconductor.cc.2.o', 'src/solver/poisson/poisson_semiconductor_hanging_node.cc.2.o', 'src/solver/ray_tracing/light_thread.cc.2.o', 'src/solver/ray_tracing/object_tree.cc.2.o', 'src/solver/ray_tracing/ray_tracing.cc.2.o', 'src/solver/solver_base.cc.2.o', 'src/solver/solver_specify.cc.2.o', 'src/solver/stress_solver/stress_solver.cc.2.o', 'src/source/electrical_source.cc.2.o', 'src/source/field_source.cc.2.o', 'src/source/isource.cc.2.o', 'src/source/light_lenses.cc.2.o', 'src/source/light_source.cc.2.o', 'src/source/particle_source.cc.2.o', 'src/source/vsource.cc.2.o', 'src/source/waveform.cc.2.o', 'src/utils/dose_rate.cc.2.o', 'src/utils/error_vector.cc.2.o', 'src/utils/extend_to_3d.cc.2.o', 'src/utils/location_maps.cc.2.o', 'src/utils/mat_analysis.cc.2.o', 'src/utils/monot_cubic_interpolator.cc.2.o', 'src/utils/nearest_node_locator.cc.2.o', 'src/utils/octree.cc.2.o', 'src/utils/point_locator_base.cc.2.o', 'src/utils/point_locator_list.cc.2.o', 'src/utils/point_locator_tree.cc.2.o', 'src/utils/show_mesh_2d.cc.2.o', 'src/utils/statistics.cc.2.o', 'src/utils/surface_locator_base.cc.2.o', 'src/utils/surface_locator_hub.cc.2.o', 'src/utils/surface_locator_list.cc.2.o', 'src/utils/surface_locator_sphere.cc.2.o', 'src/utils/sync_file.cc.2.o', 'src/utils/tree.cc.2.o', 'src/utils/tree_node.cc.2.o', 'src/material/PMI.cc.2.o', 'src/material/material.cc.2.o', 'src/material/material_define.cc.2.o', 'src/material/physical_unit.cc.2.o', 'src/hook/dlhook.cc.1.o', 'src/main.cc.3.o', '-o', '/home/pinkchalk/Downloads/Genius-TCAD-Open-master/build/default/src/genius.LINUX', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-lcgns', '-lvtkRendering', '-lvtkGraphics', '-lvtkImaging', '-lvtkIO', '-lvtkFiltering', '-lvtkCommon', '-lvtksys', '-lvtkDICOMParser', '-lvtkpng', '-lvtktiff', '-lvtkzlib', '-lvtkjpeg', '-lvtkexpat', '-lvtkftgl', '-lvtkfreetype', '-lpthread', '-ldl', '-Wl,--export-dynamic', '-lpetsc', '-L/home/pinkchalk/petsc-3.1-p8/linux-gnu-c-debug/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lscalapack', '-lblacs', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lflapack', '-lfblas', '-lnsl', '-lrt', '-lm', '-lmpich', '-lpthread', '-lgfortran', '-lquadmath', '-Wl,-Bdynamic', '-lpetsc', '-L/home/pinkchalk/petsc-3.1-p8/linux-gnu-c-debug/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lscalapack', '-lblacs', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lflapack', '-lfblas', '-lnsl', '-lrt', '-lm', '-L/home/pinkchalk/petsc-3.1-p8/linux-gnu-c-debug/lib', '-lmpich', '-lpthread', '-lrt', '-lgfortran', '-lquadmath', '-Wl,-Bdynamic', '', '-L/usr/local/lib/vtk-5.4']

I am really having a hard time now. Hoping to hear from you soon.
Regards

[lutherthecat]

Hi,

These are missing:
libvtkNetCDF.so.5.4
ibvtkmetaio.so.5.4
libvtksqlite.so.5.4

It looks like you need to add the missing libraries to the linker line
in the part where you see:
'-lvtkRendering', '-lvtkGraphics', '-lvtkImaging', '-lvtkIO',
'-lvtkFiltering', '-lvtkCommon', '-lvtksys', '-lvtkDICOMParser',
'-lvtkpng', '-lvtktiff', '-lvtkzlib', '-lvtkjpeg', '-lvtkexpat',
'-lvtkftgl', '-lvtkfreetype'

You'd have to look through the wscript file and add them:
https://github.com/cogenda/Genius-TCAD-Open/blob/master/wscript

def config_vtk():
libs = '''vtkRendering vtkGraphics vtkImaging vtkIO vtkFiltering
vtkCommon vtksys vtkDICOMParser vtkpng vtktiff vtkzlib
vtkjpeg vtkexpat vtkftgl vtkfreetype'''.split()

[pinkchalk]

Hi,
Thanks for the help. I did what you told but now I get this error:

src/solution/vtk_io.cc.2.o: In function VTKIO::nodes_to_vtk(MeshBase const&, vtkUnstructuredGrid*)': vtk_io.cc:(.text+0x131): undefined reference tovtkPoints::New()'
src/solution/vtk_io.cc.2.o: In function VTKIO::read(std::string const&)': vtk_io.cc:(.text+0xf7e): undefined reference tovtkXMLUnstructuredGridReader::New()'
vtk_io.cc:(.text+0xfb9): undefined reference to vtkXMLUnstructuredGridReader::GetOutput()' vtk_io.cc:(.text+0x1318): undefined reference tovtkDataSetAttributes::GetScalars(char const_)'
vtk_io.cc:(.text+0x1328): undefined reference to typeinfo for vtkFloatArray' vtk_io.cc:(.text+0x132f): undefined reference totypeinfo for vtkDataArray'
vtk_io.cc:(.text+0x134b): undefined reference to vtkDataSetAttributes::GetScalars(char const_)' vtk_io.cc:(.text+0x135b): undefined reference to typeinfo for vtkFloatArray'
vtk_io.cc:(.text+0x1362): undefined reference totypeinfo for vtkDataArray' src/solution/vtk_io.cc.2.o: In function VTKIO::write_node_complex_solution(std::vector<unsigned int, std::allocator > const&, std::vector<std::complex, std::allocator<std::complex > >&, std::string const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x3438): undefined reference tovtkFloatArray::New()' vtk_io.cc:(.text+0x344a): undefined reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x34ae): undefined reference tovtkDataArrayTemplate<float>::SetNumberOfValues(long long)' vtk_io.cc:(.text+0x3510): undefined reference to vtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x35af): undefined reference tovtkDataArrayTemplate<float>::InsertValue(long long, float)' vtk_io.cc:(.text+0x35c1): undefined reference to vtkDataArrayTemplate::InsertValue(long long, float)'
vtk_io.cc:(.text+0x35ef): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)' vtk_io.cc:(.text+0x3604): undefined reference to vtkFieldData::AddArray(vtkAbstractArray_)'
src/solution/vtk_io.cc.2.o: In function VTKIO::write_node_scaler_solution(std::vector<unsigned int, std::allocator<unsigned int> > const&, std::vector<float, std::allocator<float> >&, std::string const&, vtkUnstructuredGrid*)': vtk_io.cc:(.text+0x3cd6): undefined reference tovtkFloatArray::New()'
vtk_io.cc:(.text+0x3cff): undefined reference to vtkDataArrayTemplate<float>::SetNumberOfValues(long long)' vtk_io.cc:(.text+0x3d1c): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x3dea): undefined reference to vtkDataArrayTemplate<float>::InsertValue(long long, float)' src/solution/vtk_io.cc.2.o: In functionVTKIO::write_node_vector_solution(std::vector<unsigned int, std::allocator > const&, std::vector<float, std::allocator >&, std::vector<float, std::allocator >&, std::vector<float, std::allocator >&, std::string const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x3ee9): undefined reference to vtkFloatArray::New()' vtk_io.cc:(.text+0x401d): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)'
src/solution/vtk_io.cc.2.o: In function VTKIO::write_cell_scaler_solution(std::vector<unsigned int, std::allocator<unsigned int> > const&, std::vector<float, std::allocator<float> >&, std::string const&, vtkUnstructuredGrid_)': vtk_io.cc:(.text+0x41f1): undefined reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x421b): undefined reference tovtkDataArrayTemplate<float>::SetNumberOfValues(long long)' vtk_io.cc:(.text+0x4238): undefined reference to vtkFieldData::AddArray(vtkAbstractArray*)'
vtk_io.cc:(.text+0x42ea): undefined reference tovtkDataArrayTemplate<float>::InsertValue(long long, float)' src/solution/vtk_io.cc.2.o: In function VTKIO::write_cell_vector_solution(std::vector<unsigned int, std::allocator > const&, std::vector<float, std::allocator >&, std::vector<float, std::allocator >&, std::vector<float, std::allocator >&, std::string const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x4399): undefined reference tovtkFloatArray::New()' vtk_io.cc:(.text+0x44cd): undefined reference to vtkFieldData::AddArray(vtkAbstractArray*)'
src/solution/vtk_io.cc.2.o: In functionVTKIO::cells_to_vtk(MeshBase const&, vtkUnstructuredGrid_)': vtk_io.cc:(.text+0x90e9): undefined reference to vtkIdList::New()'
vtk_io.cc:(.text+0x9105): undefined reference tovtkIdList::SetNumberOfIds(long long)' vtk_io.cc:(.text+0x91ac): undefined reference to vtkUnstructuredGrid::InsertNextCell(int, vtkIdList_)'
vtk_io.cc:(.text+0x9262): undefined reference to vtkIdList::New()' vtk_io.cc:(.text+0x927e): undefined reference tovtkIdList::SetNumberOfIds(long long)'
vtk_io.cc:(.text+0x9332): undefined reference to vtkUnstructuredGrid::InsertNextCell(int, vtkIdList*)' src/solution/vtk_io.cc.2.o: In functionVTKIO::meshinfo_to_vtk(MeshBase const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x9be8): undefined reference to vtkIntArray::New()' vtk_io.cc:(.text+0x9bf0): undefined reference tovtkIntArray::New()'
vtk_io.cc:(.text+0x9bf8): undefined reference to vtkIntArray::New()' vtk_io.cc:(.text+0x9c1a): undefined reference tovtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x9c39): undefined reference to vtkDataArrayTemplate<int>::SetNumberOfValues(long long)' vtk_io.cc:(.text+0x9c58): undefined reference tovtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x9e0a): undefined reference to vtkFieldData::AddArray(vtkAbstractArray_)' vtk_io.cc:(.text+0x9e1b): undefined reference to vtkFieldData::AddArray(vtkAbstractArray*)'
vtk_io.cc:(.text+0x9e27): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)' src/solution/vtk_io.cc.2.o: In function VTKIO::write(std::string const&)':
vtk_io.cc:(.text+0xdf19): undefined reference tovtkUnstructuredGrid::New()' vtk_io.cc:(.text+0xdf7e): undefined reference to vtkXMLUnstructuredGridWriter::vtkXMLUnstructuredGridWriter()'
vtk_io.cc:(.text+0xdfb0): undefined reference tovtkXMLWriter::SetInput(vtkDataObject_)' vtk_io.cc:(.text+0xdff6): undefined reference to vtkXMLWriter::Write()'
src/solution/vtk_io.cc.2.o: In functionvtkXMLUnstructuredGridWriter::NewInstanceInternal() const': vtk_io.cc:(.text._ZNK28vtkXMLUnstructuredGridWriter19NewInstanceInternalEv[_ZNK28vtkXMLUnstructuredGridWriter19NewInstanceInternalEv]+0x1): undefined reference to vtkXMLUnstructuredGridWriter::New()'
src/solution/vtk_io.cc.2.o: In functionvtkXMLUnstructuredGridWriter::IsA(char const_)': vtk_io.cc:(.text._ZN28vtkXMLUnstructuredGridWriter3IsAEPKc[_ZN28vtkXMLUnstructuredGridWriter3IsAEPKc]+0x70): undefined reference to vtkObjectBase::IsTypeOf(char const_)'
src/solution/vtk_io.cc.2.o: In function VTKIO::XMLUnstructuredGridWriter::~XMLUnstructuredGridWriter()': vtk_io.cc:(.text._ZN5VTKIO25XMLUnstructuredGridWriterD2Ev[_ZN5VTKIO25XMLUnstructuredGridWriterD5Ev]+0x2e): undefined reference tovtkXMLUnstructuredGridWriter::~vtkXMLUnstructuredGridWriter()'
src/solution/vtk_io.cc.2.o: In function VTKIO::XMLUnstructuredGridWriter::~XMLUnstructuredGridWriter()': vtk_io.cc:(.text._ZN5VTKIO25XMLUnstructuredGridWriterD0Ev[_ZN5VTKIO25XMLUnstructuredGridWriterD0Ev]+0x2e): undefined reference tovtkXMLUnstructuredGridWriter::~vtkXMLUnstructuredGridWriter()'
src/solution/vtk_io.cc.2.o: In function vtkAlgorithm::GetInformation()': vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x10): undefined reference tovtkObject::GetDebug()'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x31): undefined reference to vtkObject::GetGlobalWarningDisplay()' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x40): undefined reference tovtkOStrStreamWrapper::vtkOStrStreamWrapper()'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x4c): undefined reference to vtkObjectBase::GetClassName() const' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x57): undefined reference tovtkObjectBase::GetClassName() const'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x69): undefined reference to vtkOStreamWrapper::operator<<(char const*)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x76): undefined reference tovtkOStreamWrapper::operator<<(int)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[ZN12vtkAlgorithm14GetInformationEv]+0x85): undefined reference to vtkOStreamWrapper::operator<<(char const*)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x90): undefined reference tovtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x9f): undefined reference to vtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xaa): undefined reference to vtkOStreamWrapper::operator<<(void*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[ZN12vtkAlgorithm14GetInformationEv]+0xb9): undefined reference tovtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xc4): undefined reference to vtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[ZN12vtkAlgorithm14GetInformationEv]+0xd3): undefined reference to vtkOStreamWrapper::operator<<(char const*)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xde): undefined reference tovtkOStreamWrapper::operator<<(void)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xed): undefined reference to vtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xf8): undefined reference to vtkOStreamWrapper::operator<<(void*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x107): undefined reference tovtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x10f): undefined reference to vtkOStrStreamWrapper::str()'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x117): undefined reference tovtkOutputWindowDisplayDebugText(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x11f): undefined reference to vtkOStrStreamWrapper::rdbuf()'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x129): undefined reference tovtkOStrStreamWrapper::freeze(int)' vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x131): undefined reference to vtkOStrStreamWrapper::~vtkOStrStreamWrapper()'
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x141): undefined reference tovtkOStrStreamWrapper::~vtkOStrStreamWrapper()' src/solution/vtk_io.cc.2.o: In function vtkAlgorithm::SetAbortExecute(int)':
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x12): undefined reference tovtkObject::GetDebug()' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x41): undefined reference to vtkObject::GetGlobalWarningDisplay()'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x50): undefined reference tovtkOStrStreamWrapper::vtkOStrStreamWrapper()' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x58): undefined reference to vtkObjectBase::GetClassName() const'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x63): undefined reference tovtkObjectBase::GetClassName() const' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x75): undefined reference to vtkOStreamWrapper::operator<<(char const*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x82): undefined reference tovtkOStreamWrapper::operator<<(int)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x91): undefined reference to vtkOStreamWrapper::operator<<(char const*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[ZN12vtkAlgorithm15SetAbortExecuteEi]+0x9c): undefined reference tovtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xab): undefined reference to vtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[ZN12vtkAlgorithm15SetAbortExecuteEi]+0xb6): undefined reference to vtkOStreamWrapper::operator<<(void*)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xc5): undefined reference tovtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xd0): undefined reference to vtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xdf): undefined reference to vtkOStreamWrapper::operator<<(char const*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[ZN12vtkAlgorithm15SetAbortExecuteEi]+0xea): undefined reference tovtkOStreamWrapper::operator<<(void_)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xf9): undefined reference to vtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[ZN12vtkAlgorithm15SetAbortExecuteEi]+0x103): undefined reference to vtkOStreamWrapper::operator<<(int)' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x112): undefined reference tovtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[ZN12vtkAlgorithm15SetAbortExecuteEi]+0x11a): undefined reference to vtkOStrStreamWrapper::str()' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x122): undefined reference tovtkOutputWindowDisplayDebugText(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x12a): undefined reference to vtkOStrStreamWrapper::rdbuf()' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x134): undefined reference tovtkOStrStreamWrapper::freeze(int)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x13c): undefined reference to vtkOStrStreamWrapper::~vtkOStrStreamWrapper()' vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x14c): undefined reference tovtkOStrStreamWrapper::~vtkOStrStreamWrapper()'
src/solution/vtk_io.cc.2.o: In function vtkAlgorithm::GetAbortExecute()': vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x10): undefined reference tovtkObject::GetDebug()'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x31): undefined reference to vtkObject::GetGlobalWarningDisplay()' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x40): undefined reference tovtkOStrStreamWrapper::vtkOStrStreamWrapper()'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x4c): undefined reference to vtkObjectBase::GetClassName() const' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x57): undefined reference tovtkObjectBase::GetClassName() const'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x69): undefined reference to vtkOStreamWrapper::operator<<(char const*)' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x76): undefined reference tovtkOStreamWrapper::operator<<(int)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[ZN12vtkAlgorithm15GetAbortExecuteEv]+0x85): undefined reference to vtkOStreamWrapper::operator<<(char const*)' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x90): undefined reference tovtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x9f): undefined reference to vtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0xaa): undefined reference to vtkOStreamWrapper::operator<<(void*)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[ZN12vtkAlgorithm15GetAbortExecuteEv]+0xb9): undefined reference tovtkOStreamWrapper::operator<<(char const_)' vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0xc4): undefined reference to vtkOStreamWrapper::operator<<(char const)'
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0xd3): undefined reference to

... and this continues. Too long to be fully pasted.
Hoping to hear from you soon.
Regards

The 20 or so lines before the first "undefined reference" will help.

shenchen

On 2014-02-15 16:06, Ashish Kumar wrote:

Hi,
Thanks
for the help. I did what you told but now I get this error:

src/solution/vtk_io.cc.2.o: In function VTKIO::nodes_to_vtk(MeshBase
const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x131): undefined
reference tovtkPoints::New()'
src/solution/vtk_io.cc.2.o: In function
VTKIO::read(std::string const&)':
vtk_io.cc:(.text+0xf7e): undefined
reference tovtkXMLUnstructuredGridReader::New()'

vtk_io.cc:(.text+0xfb9): undefined reference to
vtkXMLUnstructuredGridReader::GetOutput()'
vtk_io.cc:(.text+0x1318):
undefined reference tovtkDataSetAttributes::GetScalars(char const*)'

vtk_io.cc:(.text+0x1328): undefined reference to typeinfo for
vtkFloatArray'
vtk_io.cc:(.text+0x132f): undefined reference
totypeinfo for vtkDataArray'
vtk_io.cc:(.text+0x134b): undefined
reference to vtkDataSetAttributes::GetScalars(char const*)'

vtk_io.cc:(.text+0x135b): undefined reference totypeinfo for
vtkFloatArray'
vtk_io.cc:(.text+0x1362): undefined reference to
typeinfo for vtkDataArray'
src/solution/vtk_io.cc.2.o: In
functionVTKIO::write_node_complex_solution(std::vector > const&,
std::vectorstd::complex, std::allocatorstd::complex > >&, std::string
const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x3438): undefined
reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x344a): undefined
reference tovtkFloatArray::New()'
vtk_io.cc:(.text+0x34ae): undefined
reference to vtkDataArrayTemplate::SetNumberOfValues(long long)'

vtk_io.cc:(.text+0x3510): undefined reference
tovtkDataArrayTemplate::SetNumberOfValues(long long)'

vtk_io.cc:(.text+0x35af): undefined reference to
vtkDataArrayTemplate::InsertValue(long long, float)'

vtk_io.cc:(.text+0x35c1): undefined reference
tovtkDataArrayTemplate::InsertValue(long long, float)'

vtk_io.cc:(.text+0x35ef): undefined reference to
vtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x3604):
undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)'

src/solution/vtk_io.cc.2.o: In function
VTKIO::write_node_scaler_solution(std::vector > const&, std::vector >&,
std::string const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x3cd6):
undefined reference tovtkFloatArray::New()'
vtk_io.cc:(.text+0x3cff):
undefined reference to vtkDataArrayTemplate::SetNumberOfValues(long
long)'
vtk_io.cc:(.text+0x3d1c): undefined reference
tovtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x3dea):
undefined reference to vtkDataArrayTemplate::InsertValue(long long,
float)'
src/solution/vtk_io.cc.2.o: In
functionVTKIO::write_node_vector_solution(std::vector > const&,
std::vector >&, std::vector >&, std::vector >&, std::string const&,
vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x3ee9): undefined reference
to vtkFloatArray::New()'
vtk_io.cc:(.text+0x401d): undefined reference
tovtkFieldData::AddArray(vtkAbstractArray_)'

src/solution/vtk_io.cc.2.o: In function
VTKIO::write_cell_scaler_solution(std::vector > const&, std::vector >&,
std::string const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x41f1):
undefined reference tovtkFloatArray::New()'
vtk_io.cc:(.text+0x421b):
undefined reference to vtkDataArrayTemplate::SetNumberOfValues(long
long)'
vtk_io.cc:(.text+0x4238): undefined reference
tovtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x42ea):
undefined reference to vtkDataArrayTemplate::InsertValue(long long,
float)'
src/solution/vtk_io.cc.2.o: In
functionVTKIO::write_cell_vector_solution(std::vector > const&,
std::vector >&, std::vector >&, std::vector >&, std::string const&,
vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x4399): undefined reference
to vtkFloatArray::New()'
vtk_io.cc:(.text+0x44cd): undefined reference
tovtkFieldData::AddArray(vtkAbstractArray_)'

src/solution/vtk_io.cc.2.o: In function VTKIO::cells_to_vtk(MeshBase
const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x90e9): undefined
reference tovtkIdList::New()'
vtk_io.cc:(.text+0x9105): undefined
reference to vtkIdList::SetNumberOfIds(long long)'

vtk_io.cc:(.text+0x91ac): undefined reference
tovtkUnstructuredGrid::InsertNextCell(int, vtkIdList*)'

vtk_io.cc:(.text+0x9262): undefined reference to vtkIdList::New()'

vtk_io.cc:(.text+0x927e): undefined reference
tovtkIdList::SetNumberOfIds(long long)'
vtk_io.cc:(.text+0x9332):
undefined reference to vtkUnstructuredGrid::InsertNextCell(int,
vtkIdList_)'
src/solution/vtk_io.cc.2.o: In
functionVTKIO::meshinfo_to_vtk(MeshBase const&,
vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x9be8): undefined reference
to vtkIntArray::New()'
vtk_io.cc:(.text+0x9bf0): undefined reference
tovtkIntArray::New()'
vtk_io.cc:(.text+0x9bf8): undefined reference to
vtkIntArray::New()'
vtk_io.cc:(.text+0x9c1a): undefined reference
tovtkDataArrayTemplate::SetNumberOfValues(long long)'

vtk_io.cc:(.text+0x9c39): undefined reference to
vtkDataArrayTemplate::SetNumberOfValues(long long)'

vtk_io.cc:(.text+0x9c58): undefined reference
tovtkDataArrayTemplate::SetNumberOfValues(long long)'

vtk_io.cc:(.text+0x9e0a): undefined reference to
vtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x9e1b):
undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)'

vtk_io.cc:(.text+0x9e27): undefined reference to
vtkFieldData::AddArray(vtkAbstractArray*)'
src/solution/vtk_io.cc.2.o:
In functionVTKIO::write(std::string const&)':

vtk_io.cc:(.text+0xdf19): undefined reference to
vtkUnstructuredGrid::New()'
vtk_io.cc:(.text+0xdf7e): undefined
reference
tovtkXMLUnstructuredGridWriter::vtkXMLUnstructuredGridWriter()'

vtk_io.cc:(.text+0xdfb0): undefined reference to
vtkXMLWriter::SetInput(vtkDataObject*)'
vtk_io.cc:(.text+0xdff6):
undefined reference tovtkXMLWriter::Write()'

src/solution/vtk_io.cc.2.o: In function
vtkXMLUnstructuredGridWriter::NewInstanceInternal() const':

vtk_io.cc:(.text._ZNK28vtkXMLUnstructuredGridWriter19NewInstanceInternalEv[_ZNK28vtkXMLUnstructuredGridWriter19NewInstanceInternalEv]+0x1):
undefined reference tovtkXMLUnstructuredGridWriter::New()'

src/solution/vtk_io.cc.2.o: In function
vtkXMLUnstructuredGridWriter::IsA(char const*)':

vtk_io.cc:(.text._ZN28vtkXMLUnstructuredGridWriter3IsAEPKc[_ZN28vtkXMLUnstructuredGridWriter3IsAEPKc]+0x70):
undefined reference tovtkObjectBase::IsTypeOf(char const*)'

src/solution/vtk_io.cc.2.o: In function
VTKIO::XMLUnstructuredGridWriter::~XMLUnstructuredGridWriter()':

vtk_io.cc:(.text._ZN5VTKIO25XMLUnstructuredGridWriterD2Ev[_ZN5VTKIO25XMLUnstructuredGridWriterD5Ev]+0x2e):
undefined reference
tovtkXMLUnstructuredGridWriter::~vtkXMLUnstructuredGridWriter()'

src/solution/vtk_io.cc.2.o: In function
VTKIO::XMLUnstructuredGridWriter::~XMLUnstructuredGridWriter()':

vtk_io.cc:(.text._ZN5VTKIO25XMLUnstructuredGridWriterD0Ev[_ZN5VTKIO25XMLUnstructuredGridWriterD0Ev]+0x2e):
undefined reference
tovtkXMLUnstructuredGridWriter::~vtkXMLUnstructuredGridWriter()'

src/solution/vtk_io.cc.2.o: In function
vtkAlgorithm::GetInformation()':

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x10):
undefined reference tovtkObject::GetDebug()'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x31):
undefined reference to vtkObject::GetGlobalWarningDisplay()'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x40):
undefined reference tovtkOStrStreamWrapper::vtkOStrStreamWrapper()'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x4c):
undefined reference to vtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x57):
undefined reference tovtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x69):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x85):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x9f):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xb9):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xd3):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0xed):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x107):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x117):
undefined reference to vtkOutputWindowDisplayDebugText(char const*)'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x11f):
undefined reference tovtkOStrStreamWrapper::rdbuf()'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x129):
undefined reference to vtkOStrStreamWrapper::freeze(int)'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x131):
undefined reference tovtkOStrStreamWrapper::~vtkOStrStreamWrapper()'

vtk_io.cc:(.text._ZN12vtkAlgorithm14GetInformationEv[_ZN12vtkAlgorithm14GetInformationEv]+0x141):
undefined reference to vtkOStrStreamWrapper::~vtkOStrStreamWrapper()'

src/solution/vtk_io.cc.2.o: In
functionvtkAlgorithm::SetAbortExecute(int)':

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x12):
undefined reference to vtkObject::GetDebug()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x41):
undefined reference tovtkObject::GetGlobalWarningDisplay()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x50):
undefined reference to vtkOStrStreamWrapper::vtkOStrStreamWrapper()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x58):
undefined reference tovtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x63):
undefined reference to vtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x75):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x91):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xab):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xc5):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xdf):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0xf9):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x112):
undefined reference tovtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x122):
undefined reference tovtkOutputWindowDisplayDebugText(char const*)'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x12a):
undefined reference to vtkOStrStreamWrapper::rdbuf()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x134):
undefined reference tovtkOStrStreamWrapper::freeze(int)'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x13c):
undefined reference to vtkOStrStreamWrapper::~vtkOStrStreamWrapper()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15SetAbortExecuteEi[_ZN12vtkAlgorithm15SetAbortExecuteEi]+0x14c):
undefined reference tovtkOStrStreamWrapper::~vtkOStrStreamWrapper()'

src/solution/vtk_io.cc.2.o: In function
vtkAlgorithm::GetAbortExecute()':

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x10):
undefined reference tovtkObject::GetDebug()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x31):
undefined reference to vtkObject::GetGlobalWarningDisplay()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x40):
undefined reference tovtkOStrStreamWrapper::vtkOStrStreamWrapper()'

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x4c):
undefined reference to vtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x57):
undefined reference tovtkObjectBase::GetClassName() const'

vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x69):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x85):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0x9f):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0xb9):
undefined reference to vtkOStreamWrapper::operator<
vtk_io.cc:(.text._ZN12vtkAlgorithm15GetAbortExecuteEv[_ZN12vtkAlgorithm15GetAbortExecuteEv]+0xd3):
undefined reference to

... and this continues. Too long to be
fully pasted.
Hoping to hear from you soon.
Regards

Reply
to this email directly or view it on GitHub [1].

Links:

[1]
#18 (comment)

[pinkchalk]

There were none. It just starts with these undefined references.

[pinkchalk]

What I understand is that all these issues are related to vtk. If possible can you please provide me with a step by step guide to build vtk? I am using version 5.4.2.
Regards

Below is the options I used for VTK, using static library

'-DCMAKE_BUILD_TYPE:STRING=RELEASE'

'-DCMAKE_INSTALL_PREFIX:PATH=${TGTDIR}'

'-DCMAKE_INCLUDE_PATH:PATH=${TGTDIR}/include'

'-DCMAKE_LIBRARY_PATH:PATH=${TGTDIR}/lib'

'-DBUILD_DOCUMENTATION:BOOL=OFF'
'-DBUILD_EXAMPLES:BOOL=OFF'

'-DBUILD_TESTING:BOOL=OFF'
'-DVTK_DEBUG_LEAKS:BOOL=OFF'

'-DVTK_USE_RPATH:BOOL=OFF'
'-DVTK_USE_X:BOOL=OFF'

'-DVTK_USE_GUISUPPORT:BOOL=ON'
'-DVTK_USE_INFOVIS:BOOL=ON'

'-DVTK_USE_PARALLEL:BOOL=OFF'
'-DVTK_USE_RENDERING:BOOL=ON'

'-DVTK_USE_VIEWS:BOOL=ON'
'-DVTK_USE_GL2PS:BOOL=OFF'

'-DVTK_USE_N_WAY_ARRAYS:BOOL=ON'
'-DVTK_USE_TK:BOOL=OFF'

'-DVTK_WRAP_JAVA:BOOL=OFF'
'-DVTK_WRAP_PYTHON:BOOL=OFF'

'-DVTK_WRAP_TCL:BOOL=OFF'
'-DBUILD_SHARED_LIBS:BOOL=OFF'

'-DCMAKE_C_FLAGS:STRING=-O3 -DNDEBUG -fPIC'

'-DCMAKE_CXX_FLAGS:STRING=-O3 -DNDEBUG -fPIC'

As you see, a lot of VTK
modules were disabled. You don't need the extra -l options in the
wscript, as lutherthecat suggested.

We may switch to cmake at some
point, since Petsc and VTK both uses cmake now, this will make
compatibility easier.

regards,
shenchen

On 2014-02-15 20:29, Ashish
Kumar wrote:

What I understand is that all these issues are related
to vtk. If possible can you please provide me with a step by step guide
to build vtk? I am using version 5.4.2.
Regards

Reply to
this email directly or view it on GitHub [1].

Links:

[1]
#18 (comment)

[pinkchalk]

I get the same error again. Have built vtk as directged but still.

Setting top to : /home/pinkchalk/Downloads/Genius-TCAD-Open-master
Setting out to : /home/pinkchalk/Downloads/Genius-TCAD-Open-master/build/default
Checking for 'icc' (c compiler) : not found
Checking for 'gcc' (c compiler) : ok
Checking for 'icpc' (c++ compiler) : not found
Checking for 'g++' (c++ compiler) : ok
Checking for 'ifort' (fortran compiler) : not found
Checking for 'gfortran' (fortran compiler) : ok
Checking for program git : not found
Setting version string : 20140215
Detecting optimization options : -O2 -unroll -msse3
Checking for visibility flags : yes
Checking for size of double : yes
Checking for size of float : yes
Checking for size of int : yes
Checking for size of long int : yes
Checking for size of long long int : yes
Checking for size of short int : yes
Checking for size of void * : yes
Checking for header fcntl.h : yes
Checking for header float.h : yes
Checking for header fenv.h : yes
Checking for header limits.h : yes
Checking for header stddef.h : yes
Checking for header stdlib.h : yes
Checking for header string.h : yes
Checking for header stdio.h : yes
Checking for header assert.h : yes
Checking for header sys/time.h : yes
Checking for header sys/types.h : yes
Checking for header sys/stat.h : yes
Checking for header stdlib.h : yes
Checking for header string.h : yes
Checking for header memory.h : yes
Checking for header strings.h : yes
Checking for header inttypes.h : yes
Checking for header stdint.h : yes
Checking for header unistd.h : yes
Checking for header tr1/unordered_map : yes
Checking for header tr1/unordered_set : yes
Checking for header unordered_map : not found
Checking for header unordered_set : not found
Checking for header limits : yes
Checking for c++ namespaces : yes
Checking for std::sstream : yes
Checking for library m : yes
Using Petsc version 3.1.0
Checking for header petscversion.h : yes
Checking for MPI : yes
Checking MPI library : ok
Checking Fortran library : ok
Checking for library Petsc : yes
Checking for header nglib.h : no
Checking for header nglib.h : no
Checking for header nglib.h : no
Checking for header nglib.h : no
Checking for header nglib.h : no
Checking for header cgnslib.h : yes
Checking for library cgns : yes
Checking for header vtkConfigure.h : no
Checking for header vtkConfigure.h : no
Checking for header vtkConfigure.h : yes
Checking for libraries for VTK : no
Checking for program flex : /usr/bin/flex
Checking for program bison : /usr/bin/bison
'configure' finished successfully (7.434s)
Waf: Entering directory /home/pinkchalk/Downloads/Genius-TCAD-Open-master/build/default' [587/587] cxxprogram: build/default/src/contrib/ann/ANN.cpp.0.o build/default/src/contrib/ann/bd_fix_rad_search.cpp.0.o build/default/src/contrib/ann/bd_pr_search.cpp.0.o build/default/src/contrib/ann/bd_search.cpp.0.o build/default/src/contrib/ann/bd_tree.cpp.0.o build/default/src/contrib/ann/brute.cpp.0.o build/default/src/contrib/ann/kd_dump.cpp.0.o build/default/src/contrib/ann/kd_fix_rad_search.cpp.0.o build/default/src/contrib/ann/kd_pr_search.cpp.0.o build/default/src/contrib/ann/kd_search.cpp.0.o build/default/src/contrib/ann/kd_split.cpp.0.o build/default/src/contrib/ann/kd_tree.cpp.0.o build/default/src/contrib/ann/kd_util.cpp.0.o build/default/src/contrib/ann/perf.cpp.0.o build/default/src/contrib/csabathy/csa.cc.1.o build/default/src/contrib/csabathy/svd.c.1.o build/default/src/contrib/expreval/expr.cc.1.o build/default/src/contrib/expreval/expr_datalist.cc.1.o build/default/src/contrib/expreval/expr_except.cc.1.o build/default/src/contrib/expreval/expr_func.cc.1.o build/default/src/contrib/expreval/expr_funclist.cc.1.o build/default/src/contrib/expreval/expr_node.cc.1.o build/default/src/contrib/expreval/expr_parser.cc.1.o build/default/src/contrib/expreval/expr_vallist.cc.1.o build/default/src/contrib/spice/schur_solver.cc.1.o build/default/src/contrib/spice/spice_ckt.cc.1.o build/default/src/contrib/tif3d/tif3d.cc.1.o build/default/src/contrib/klu/UFconfig.c.1.o build/default/src/contrib/klu/amd_1.c.1.o build/default/src/contrib/klu/amd_2.c.1.o build/default/src/contrib/klu/amd_aat.c.1.o build/default/src/contrib/klu/amd_control.c.1.o build/default/src/contrib/klu/amd_defaults.c.1.o build/default/src/contrib/klu/amd_dump.c.1.o build/default/src/contrib/klu/amd_global.c.1.o build/default/src/contrib/klu/amd_info.c.1.o build/default/src/contrib/klu/amd_order.c.1.o build/default/src/contrib/klu/amd_post_tree.c.1.o build/default/src/contrib/klu/amd_postorder.c.1.o build/default/src/contrib/klu/amd_preprocess.c.1.o build/default/src/contrib/klu/amd_valid.c.1.o build/default/src/contrib/klu/btf_maxtrans.c.1.o build/default/src/contrib/klu/btf_order.c.1.o build/default/src/contrib/klu/btf_strongcomp.c.1.o build/default/src/contrib/klu/colamd.c.1.o build/default/src/contrib/klu/colamd_global.c.1.o build/default/src/contrib/klu/klu.c.1.o build/default/src/contrib/klu/klu_analyze.c.1.o build/default/src/contrib/klu/klu_analyze_given.c.1.o build/default/src/contrib/klu/klu_defaults.c.1.o build/default/src/contrib/klu/klu_diagnostics.c.1.o build/default/src/contrib/klu/klu_dump.c.1.o build/default/src/contrib/klu/klu_extract.c.1.o build/default/src/contrib/klu/klu_factor.c.1.o build/default/src/contrib/klu/klu_free_numeric.c.1.o build/default/src/contrib/klu/klu_free_symbolic.c.1.o build/default/src/contrib/klu/klu_kernel.c.1.o build/default/src/contrib/klu/klu_memory.c.1.o build/default/src/contrib/klu/klu_refactor.c.1.o build/default/src/contrib/klu/klu_scale.c.1.o build/default/src/contrib/klu/klu_solve.c.1.o build/default/src/contrib/klu/klu_sort.c.1.o build/default/src/contrib/klu/klu_tsolve.c.1.o build/default/src/contrib/mxml/MXMLUtil.cpp.1.o build/default/src/contrib/mxml/mxml-attr.c.1.o build/default/src/contrib/mxml/mxml-entity.c.1.o build/default/src/contrib/mxml/mxml-file.c.1.o build/default/src/contrib/mxml/mxml-index.c.1.o build/default/src/contrib/mxml/mxml-node.c.1.o build/default/src/contrib/mxml/mxml-private.c.1.o build/default/src/contrib/mxml/mxml-search.c.1.o build/default/src/contrib/mxml/mxml-set.c.1.o build/default/src/contrib/mxml/mxml-string.c.1.o build/default/src/contrib/nn/delaunay.cc.1.o build/default/src/contrib/nn/istack.cc.1.o build/default/src/contrib/nn/lpi.cc.1.o build/default/src/contrib/spline/spline.cc.1.o build/default/src/contrib/triangle/triangle.c.1.o build/default/src/contrib/tif/tif_tool.cc.2.o build/default/src/contrib/stanford/medici.cc.1.o build/default/src/contrib/stanford/silvaco.cc.1.o build/default/src/contrib/stanford/stanford.cc.1.o build/default/src/contrib/stanford/suprem.cc.1.o build/default/src/contrib/dfise/dfise.cc.2.o build/default/src/contrib/dfise/dfise_grid.cc.2.o build/default/src/contrib/trex/trex.c.1.o build/default/src/base/dof_object.cc.2.o build/default/src/base/genius_env.cc.2.o build/default/src/base/log.cc.2.o build/default/src/base/perf_log.cc.2.o build/default/src/bc/boundary_condition.cc.2.o build/default/src/bc/boundary_condition_collector.cc.2.o build/default/src/bc/boundary_mos_channel_elem.cc.2.o build/default/src/bc/boundary_nearest_point.cc.2.o build/default/src/fe/fe.cc.2.o build/default/src/fe/fe_base.cc.2.o build/default/src/fe/fe_boundary.cc.2.o build/default/src/fe/fe_hermite.cc.2.o build/default/src/fe/fe_hermite_shape_1D.cc.2.o build/default/src/fe/fe_hermite_shape_2D.cc.2.o build/default/src/fe/fe_hermite_shape_3D.cc.2.o build/default/src/fe/fe_lagrange.cc.2.o build/default/src/fe/fe_lagrange_shape_0D.cc.2.o build/default/src/fe/fe_lagrange_shape_1D.cc.2.o build/default/src/fe/fe_lagrange_shape_2D.cc.2.o build/default/src/fe/fe_lagrange_shape_3D.cc.2.o build/default/src/fe/fe_map.cc.2.o build/default/src/fe/number_lookups.cc.2.o build/default/src/geom/edge.cc.2.o build/default/src/geom/edge_edge2.cc.2.o build/default/src/geom/edge_edge2_fvm.cc.2.o build/default/src/geom/elem.cc.2.o build/default/src/geom/elem_refinement.cc.2.o build/default/src/geom/face_cy_quad4_fvm.cc.2.o build/default/src/geom/face_cy_tri3_fvm.cc.2.o build/default/src/geom/face_quad.cc.2.o build/default/src/geom/face_quad4.cc.2.o build/default/src/geom/face_quad4_fvm.cc.2.o build/default/src/geom/face_tri.cc.2.o build/default/src/geom/face_tri3.cc.2.o build/default/src/geom/face_tri3_fvm.cc.2.o build/default/src/geom/node_elem.cc.2.o build/default/src/geom/plane.cc.2.o build/default/src/geom/polygon.cc.2.o build/default/src/geom/polygon_usample.cc.2.o build/default/src/geom/sphere.cc.2.o build/default/src/interpolation/interpolation_1d_linear.cc.2.o build/default/src/interpolation/interpolation_1d_spline.cc.2.o build/default/src/interpolation/interpolation_2d_csa.cc.2.o build/default/src/interpolation/interpolation_2d_nn.cc.2.o build/default/src/interpolation/interpolation_3d_nbtet.cc.2.o build/default/src/interpolation/interpolation_3d_qshep.cc.2.o build/default/src/math/adolc_init.cc.2.o build/default/src/math/dense_matrix.cc.2.o build/default/src/math/dense_matrix_base.cc.2.o build/default/src/math/dense_vector.cc.2.o build/default/src/math/dense_vector_base.cc.2.o build/default/src/math/expr_evaluate.cc.2.o build/default/src/math/numeric_vector.cc.2.o build/default/src/math/petsc_matrix.cc.2.o build/default/src/math/petsc_type.cc.2.o build/default/src/math/petsc_utils.cc.2.o build/default/src/math/petsc_vector.cc.2.o build/default/src/math/sparse_matrix.cc.2.o build/default/src/math/symbolic_matrix.cc.2.o build/default/src/math/type_tensor.cc.2.o build/default/src/math/type_vector.cc.2.o build/default/src/mesh/boundary_info.cc.2.o build/default/src/mesh/boundary_mesh.cc.2.o build/default/src/mesh/mesh_base.cc.2.o build/default/src/mesh/mesh_communication.cc.2.o build/default/src/mesh/mesh_modification.cc.2.o build/default/src/mesh/mesh_refinement.cc.2.o build/default/src/mesh/mesh_refinement_flagging.cc.2.o build/default/src/mesh/mesh_refinement_smoothing.cc.2.o build/default/src/mesh/mesh_tools.cc.2.o build/default/src/mesh/serial_mesh.cc.2.o build/default/src/mesh/serial_mesh_iterators.cc.2.o build/default/src/mesh/unstructured_mesh.cc.2.o build/default/src/meshgen/mesh_generation.cc.2.o build/default/src/meshgen/mesh_generation_quad4.cc.2.o build/default/src/meshgen/mesh_generation_tri3.cc.2.o build/default/src/parser/file_include.cc.2.o build/default/src/parser/parser.cc.2.o build/default/src/parser/parser_card.cc.2.o build/default/src/parser/parser_parameter.cc.2.o build/default/src/parser/pattern.cc.2.o build/default/src/parser/pattern_xml.cc.2.o build/default/src/partition/linear_partitioner.cc.2.o build/default/src/partition/metis_partitioner.cc.2.o build/default/src/partition/parmetis_partitioner.cc.2.o build/default/src/partition/partitioner.cc.2.o build/default/src/quadrature/quadrature.cc.2.o build/default/src/quadrature/quadrature_build.cc.2.o build/default/src/quadrature/quadrature_conical.cc.2.o build/default/src/quadrature/quadrature_conical_2D.cc.2.o build/default/src/quadrature/quadrature_conical_3D.cc.2.o build/default/src/quadrature/quadrature_gauss.cc.2.o build/default/src/quadrature/quadrature_gauss_1D.cc.2.o build/default/src/quadrature/quadrature_gauss_2D.cc.2.o build/default/src/quadrature/quadrature_gauss_3D.cc.2.o build/default/src/quadrature/quadrature_jacobi_1D.cc.2.o build/default/src/solution/cgns_io.cc.2.o build/default/src/solution/conductor_region.cc.2.o build/default/src/solution/control.cc.2.o build/default/src/solution/dfise_io.cc.2.o build/default/src/solution/external_circuit.cc.2.o build/default/src/solution/external_circuit_pi.cc.2.o build/default/src/solution/external_circuit_rcl.cc.2.o build/default/src/solution/external_circuit_rct.cc.2.o build/default/src/solution/fvm_cell_data.cc.2.o build/default/src/solution/fvm_node_data.cc.2.o build/default/src/solution/fvm_node_info.cc.2.o build/default/src/solution/gdml_io.cc.2.o build/default/src/solution/insulator_region.cc.2.o build/default/src/solution/location_io.cc.2.o build/default/src/solution/pml_region.cc.2.o build/default/src/solution/resistance_region.cc.2.o build/default/src/solution/semiconductor_region.cc.2.o build/default/src/solution/simulation_region.cc.2.o build/default/src/solution/simulation_system.cc.2.o build/default/src/solution/solution_define.cc.2.o build/default/src/solution/stanford_io.cc.2.o build/default/src/solution/tif3d_io.cc.2.o build/default/src/solution/tif_io.cc.2.o build/default/src/solution/vacuum_region.cc.2.o build/default/src/solution/variable_define.cc.2.o build/default/src/solution/vtk_io.cc.2.o build/default/src/solver/ddm1/ddm1.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_ei_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_float_metal.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_gate.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_hetero_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_homo_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_ii_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_ir_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_is_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_ohmic.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_resistance_ohmic.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_resistance_schottky.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_rr_interface.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_schottky.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_simple_gate.cc.2.o build/default/src/solver/ddm1/ddm1_boundary_solderpad.cc.2.o build/default/src/solver/ddm1/ddm1_conductor.cc.2.o build/default/src/solver/ddm1/ddm1_conductor_hanging_node.cc.2.o build/default/src/solver/ddm1/ddm1_insulator.cc.2.o build/default/src/solver/ddm1/ddm1_insulator_hanging_node.cc.2.o build/default/src/solver/ddm1/ddm1_resistance.cc.2.o build/default/src/solver/ddm1/ddm1_resistance_hanging_node.cc.2.o build/default/src/solver/ddm1/ddm1_semiconductor.cc.2.o build/default/src/solver/ddm1/ddm1_semiconductor_hanging_node.cc.2.o build/default/src/solver/ddm1r/ddm1r.cc.2.o build/default/src/solver/ddm1r/ddm1r_boundary_ir_interface.cc.2.o build/default/src/solver/ddm1r/ddm1r_boundary_resistance_ohmic.cc.2.o build/default/src/solver/ddm1r/ddm1r_boundary_resistance_schottky.cc.2.o build/default/src/solver/ddm1r/ddm1r_boundary_rr_interface.cc.2.o build/default/src/solver/ddm1r/ddm1r_boundary_solderpad.cc.2.o build/default/src/solver/ddm1r/ddm1r_resistance.cc.2.o build/default/src/solver/ddm1r/ddm1r_resistance_hanging_node.cc.2.o build/default/src/solver/ddm2/ddm2.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_ei_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_ev.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_float_metal.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_gate.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_hetero_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_homo_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_ii_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_ir_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_is_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_iv.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_neumann.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_ohmic.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_resistance_ohmic.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_resistance_schottky.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_rr_interface.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_schottky.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_simple_gate.cc.2.o build/default/src/solver/ddm2/ddm2_boundary_solderpad.cc.2.o build/default/src/solver/ddm2/ddm2_conductor.cc.2.o build/default/src/solver/ddm2/ddm2_conductor_hanging_node.cc.2.o build/default/src/solver/ddm2/ddm2_insulator.cc.2.o build/default/src/solver/ddm2/ddm2_insulator_hanging_node.cc.2.o build/default/src/solver/ddm2/ddm2_resistance.cc.2.o build/default/src/solver/ddm2/ddm2_resistance_hanging_node.cc.2.o build/default/src/solver/ddm2/ddm2_semiconductor.cc.2.o build/default/src/solver/ddm2/ddm2_semiconductor_hanging_node.cc.2.o build/default/src/solver/ddm_ac/ddm_ac.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_ei_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_ev.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_float_metal.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_gate.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_hetero_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_homo_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_ii_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_ir_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_is_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_iv.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_neumann.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_ohmic.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_resistance_ohmic.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_rr_interface.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_schottky.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_simple_gate.cc.2.o build/default/src/solver/ddm_ac/ddmac_boundary_solderpad.cc.2.o build/default/src/solver/ddm_ac/ddmac_conductor.cc.2.o build/default/src/solver/ddm_ac/ddmac_insulator.cc.2.o build/default/src/solver/ddm_ac/ddmac_resistance.cc.2.o build/default/src/solver/ddm_ac/ddmac_semiconductor.cc.2.o build/default/src/solver/ddm_common/charge_integral.cc.2.o build/default/src/solver/ddm_common/ddm_solver.cc.2.o build/default/src/solver/ddm_common/gate_current.cc.2.o build/default/src/solver/ddm_common/inter_connect.cc.2.o build/default/src/solver/ddm_common/mixA_solver.cc.2.o build/default/src/solver/ddm_common/mix_inter_connect.cc.2.o build/default/src/solver/ddm_common/mix_solver.cc.2.o build/default/src/solver/ddm_common/mob_semiconductor.cc.2.o build/default/src/solver/dg/dg.cc.2.o build/default/src/solver/dg/dg_boundary_homo_interface.cc.2.o build/default/src/solver/dg/dg_boundary_is_interface.cc.2.o build/default/src/solver/dg/dg_boundary_ohmic.cc.2.o build/default/src/solver/dg/dg_boundary_resistance_ohmic.cc.2.o build/default/src/solver/dg/dg_conductor.cc.2.o build/default/src/solver/dg/dg_insulator.cc.2.o build/default/src/solver/dg/dg_resistance.cc.2.o build/default/src/solver/dg/dg_semiconductor.cc.2.o build/default/src/solver/doping_analytic/doping_analytic.cc.2.o build/default/src/solver/doping_analytic/doping_fun.cc.2.o build/default/src/solver/ebm3/ebm3.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_ei_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_ev.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_float_metal.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_gate.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_hetero_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_homo_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_ii_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_ir_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_is_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_iv.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_neumann.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_ohmic.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_resistance_ohmic.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_resistance_schottky.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_rr_interface.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_schottky.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_simple_gate.cc.2.o build/default/src/solver/ebm3/ebm3_boundary_solderpad.cc.2.o build/default/src/solver/ebm3/ebm3_conductor.cc.2.o build/default/src/solver/ebm3/ebm3_conductor_hanging_node.cc.2.o build/default/src/solver/ebm3/ebm3_insulator.cc.2.o build/default/src/solver/ebm3/ebm3_insulator_hanging_node.cc.2.o build/default/src/solver/ebm3/ebm3_resistance.cc.2.o build/default/src/solver/ebm3/ebm3_resistance_hanging_node.cc.2.o build/default/src/solver/ebm3/ebm3_semiconductor.cc.2.o build/default/src/solver/ebm3/ebm3_semiconductor_hanging_node.cc.2.o build/default/src/solver/ebm3/ebm3_semiconductor_jacob.cc.2.o build/default/src/solver/emfem2d/emfem2d.cc.2.o build/default/src/solver/fem_linear_solver.cc.2.o build/default/src/solver/fem_pde_solver.cc.2.o build/default/src/solver/fvm_explicit_solver.cc.2.o build/default/src/solver/fvm_linear_solver.cc.2.o build/default/src/solver/fvm_nonlinear_solver.cc.2.o build/default/src/solver/fvm_pde_solver.cc.2.o build/default/src/solver/hall/hall.cc.2.o build/default/src/solver/hall/hall_conductor.cc.2.o build/default/src/solver/hall/hall_insulator.cc.2.o build/default/src/solver/hall/hall_resistance.cc.2.o build/default/src/solver/hall/hall_semiconductor.cc.2.o build/default/src/solver/hdm/hdm.cc.2.o build/default/src/solver/hdm/hdm_boundary_neumann.cc.2.o build/default/src/solver/hdm/hdm_boundary_ohmic.cc.2.o build/default/src/solver/hdm/hdm_semiconductor.cc.2.o build/default/src/solver/hdm/linear_poisson.cc.2.o build/default/src/solver/hdm/linear_poisson_boundary_ohmic.cc.2.o build/default/src/solver/hdm/linear_poisson_conductor.cc.2.o build/default/src/solver/hdm/linear_poisson_insulator.cc.2.o build/default/src/solver/hdm/linear_poisson_semiconductor.cc.2.o build/default/src/solver/mix1/mix1.cc.2.o build/default/src/solver/mix1/mix1_boundary_gate.cc.2.o build/default/src/solver/mix1/mix1_boundary_ohmic.cc.2.o build/default/src/solver/mix1/mix1_boundary_schottky.cc.2.o build/default/src/solver/mix1/mix1_boundary_solderpad.cc.2.o build/default/src/solver/mixA1/mixA1.cc.2.o build/default/src/solver/mixA1/mixA1_boundary_gate.cc.2.o build/default/src/solver/mixA1/mixA1_boundary_ohmic.cc.2.o build/default/src/solver/mixA1/mixA1_boundary_schottky.cc.2.o build/default/src/solver/mixA1/mixA1_boundary_solderpad.cc.2.o build/default/src/solver/mixA2/mixA2.cc.2.o build/default/src/solver/mixA2/mixA2_boundary_gate.cc.2.o build/default/src/solver/mixA2/mixA2_boundary_ohmic.cc.2.o build/default/src/solver/mixA2/mixA2_boundary_schottky.cc.2.o build/default/src/solver/mixA2/mixA2_boundary_solderpad.cc.2.o build/default/src/solver/mixA3/mixA3.cc.2.o build/default/src/solver/mixA3/mixA3_boundary_gate.cc.2.o build/default/src/solver/mixA3/mixA3_boundary_ohmic.cc.2.o build/default/src/solver/mixA3/mixA3_boundary_schottky.cc.2.o build/default/src/solver/mixA3/mixA3_boundary_solderpad.cc.2.o build/default/src/solver/mole_analytic/mole_analytic.cc.2.o build/default/src/solver/poisson/poisson.cc.2.o build/default/src/solver/poisson/poisson_boundary_ei_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_float_metal.cc.2.o build/default/src/solver/poisson/poisson_boundary_gate.cc.2.o build/default/src/solver/poisson/poisson_boundary_hetero_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_homo_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_ii_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_ir_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_is_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_ohmic.cc.2.o build/default/src/solver/poisson/poisson_boundary_resistance_ohmic.cc.2.o build/default/src/solver/poisson/poisson_boundary_resistance_schottky.cc.2.o build/default/src/solver/poisson/poisson_boundary_rr_interface.cc.2.o build/default/src/solver/poisson/poisson_boundary_schottky.cc.2.o build/default/src/solver/poisson/poisson_boundary_simple_gate.cc.2.o build/default/src/solver/poisson/poisson_boundary_solderpad.cc.2.o build/default/src/solver/poisson/poisson_conductor.cc.2.o build/default/src/solver/poisson/poisson_conductor_hanging_node.cc.2.o build/default/src/solver/poisson/poisson_insulator.cc.2.o build/default/src/solver/poisson/poisson_insulator_hanging_node.cc.2.o build/default/src/solver/poisson/poisson_resistance.cc.2.o build/default/src/solver/poisson/poisson_resistance_hanging_node.cc.2.o build/default/src/solver/poisson/poisson_semiconductor.cc.2.o build/default/src/solver/poisson/poisson_semiconductor_hanging_node.cc.2.o build/default/src/solver/ray_tracing/light_thread.cc.2.o build/default/src/solver/ray_tracing/object_tree.cc.2.o build/default/src/solver/ray_tracing/ray_tracing.cc.2.o build/default/src/solver/solver_base.cc.2.o build/default/src/solver/solver_specify.cc.2.o build/default/src/solver/stress_solver/stress_solver.cc.2.o build/default/src/source/electrical_source.cc.2.o build/default/src/source/field_source.cc.2.o build/default/src/source/isource.cc.2.o build/default/src/source/light_lenses.cc.2.o build/default/src/source/light_source.cc.2.o build/default/src/source/particle_source.cc.2.o build/default/src/source/vsource.cc.2.o build/default/src/source/waveform.cc.2.o build/default/src/utils/dose_rate.cc.2.o build/default/src/utils/error_vector.cc.2.o build/default/src/utils/extend_to_3d.cc.2.o build/default/src/utils/location_maps.cc.2.o build/default/src/utils/mat_analysis.cc.2.o build/default/src/utils/monot_cubic_interpolator.cc.2.o build/default/src/utils/nearest_node_locator.cc.2.o build/default/src/utils/octree.cc.2.o build/default/src/utils/point_locator_base.cc.2.o build/default/src/utils/point_locator_list.cc.2.o build/default/src/utils/point_locator_tree.cc.2.o build/default/src/utils/show_mesh_2d.cc.2.o build/default/src/utils/statistics.cc.2.o build/default/src/utils/surface_locator_base.cc.2.o build/default/src/utils/surface_locator_hub.cc.2.o build/default/src/utils/surface_locator_list.cc.2.o build/default/src/utils/surface_locator_sphere.cc.2.o build/default/src/utils/sync_file.cc.2.o build/default/src/utils/tree.cc.2.o build/default/src/utils/tree_node.cc.2.o build/default/src/material/PMI.cc.2.o build/default/src/material/material.cc.2.o build/default/src/material/material_define.cc.2.o build/default/src/material/physical_unit.cc.2.o build/default/src/hook/dlhook.cc.1.o build/default/src/main.cc.3.o -> build/default/src/genius.LINUX src/solution/vtk_io.cc.2.o: In functionVTKIO::nodes_to_vtk(MeshBase const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x131): undefined reference to vtkPoints::New()' src/solution/vtk_io.cc.2.o: In functionVTKIO::read(std::string const&)':
vtk_io.cc:(.text+0xf7e): undefined reference to vtkXMLUnstructuredGridReader::New()' vtk_io.cc:(.text+0xfb9): undefined reference tovtkXMLUnstructuredGridReader::GetOutput()'
vtk_io.cc:(.text+0x1318): undefined reference to vtkDataSetAttributes::GetScalars(char const_)' vtk_io.cc:(.text+0x1328): undefined reference to typeinfo for vtkFloatArray'
vtk_io.cc:(.text+0x132f): undefined reference totypeinfo for vtkDataArray' vtk_io.cc:(.text+0x134b): undefined reference to vtkDataSetAttributes::GetScalars(char const*)'
vtk_io.cc:(.text+0x135b): undefined reference totypeinfo for vtkFloatArray' vtk_io.cc:(.text+0x1362): undefined reference to typeinfo for vtkDataArray'
src/solution/vtk_io.cc.2.o: In functionVTKIO::write_node_complex_solution(std::vector<unsigned int, std::allocator<unsigned int> > const&, std::vectorstd::complex<float, std::allocatorstd::complex<float > >&, std::string const&, vtkUnstructuredGrid_)': vtk_io.cc:(.text+0x3438): undefined reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x344a): undefined reference tovtkFloatArray::New()' vtk_io.cc:(.text+0x34ae): undefined reference to vtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x3510): undefined reference tovtkDataArrayTemplate<float>::SetNumberOfValues(long long)' vtk_io.cc:(.text+0x35af): undefined reference to vtkDataArrayTemplate::InsertValue(long long, float)'
vtk_io.cc:(.text+0x35c1): undefined reference tovtkDataArrayTemplate<float>::InsertValue(long long, float)' vtk_io.cc:(.text+0x35ef): undefined reference to vtkFieldData::AddArray(vtkAbstractArray_)'
vtk_io.cc:(.text+0x3604): undefined reference to vtkFieldData::AddArray(vtkAbstractArray*)' src/solution/vtk_io.cc.2.o: In functionVTKIO::write_node_scaler_solution(std::vector<unsigned int, std::allocator > const&, std::vector<float, std::allocator >&, std::string const&, vtkUnstructuredGrid_)':
vtk_io.cc:(.text+0x3cd6): undefined reference to vtkFloatArray::New()' vtk_io.cc:(.text+0x3cff): undefined reference tovtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x3d1c): undefined reference to vtkFieldData::AddArray(vtkAbstractArray_)' vtk_io.cc:(.text+0x3dea): undefined reference to vtkDataArrayTemplate::InsertValue(long long, float)'
src/solution/vtk_io.cc.2.o: In functionVTKIO::write_node_vector_solution(std::vector<unsigned int, std::allocator<unsigned int> > const&, std::vector<float, std::allocator<float> >&, std::vector<float, std::allocator<float> >&, std::vector<float, std::allocator<float> >&, std::string const&, vtkUnstructuredGrid_)': vtk_io.cc:(.text+0x3ee9): undefined reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x401d): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)' src/solution/vtk_io.cc.2.o: In function VTKIO::write_cell_scaler_solution(std::vector<unsigned int, std::allocator > const&, std::vector<float, std::allocator >&, std::string const&, vtkUnstructuredGrid*)':
vtk_io.cc:(.text+0x41f1): undefined reference tovtkFloatArray::New()' vtk_io.cc:(.text+0x421b): undefined reference to vtkDataArrayTemplate::SetNumberOfValues(long long)'
vtk_io.cc:(.text+0x4238): undefined reference tovtkFieldData::AddArray(vtkAbstractArray_)' vtk_io.cc:(.text+0x42ea): undefined reference to vtkDataArrayTemplate::InsertValue(long long, float)'
src/solution/vtk_io.cc.2.o: In functionVTKIO::write_cell_vector_solution(std::vector<unsigned int, std::allocator<unsigned int> > const&, std::vector<float, std::allocator<float> >&, std::vector<float, std::allocator<float> >&, std::vector<float, std::allocator<float> >&, std::string const&, vtkUnstructuredGrid_)': vtk_io.cc:(.text+0x4399): undefined reference to vtkFloatArray::New()'
vtk_io.cc:(.text+0x44cd): undefined reference to`vtkFieldData::AddArray(vtkAbstractArray*)'

Hoping to hear from you soon.
Regards