DESCRIPTION

Package: taupatch
Title: Spatial Habitat Suitability Models for Zooplankton High-Abundance Patches
Version: 0.2.0
Authors@R:
    person("Camille", "Ross", email = "camille.ross@maine.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-1428-2294"))
Description: Builds monthly spatial habitat suitability models for high-abundance
    patches ("tau-patches") of a zooplankton species, where a patch is defined by a
    species-specific abundance threshold. Zooplankton station data is matched to
    Copernicus Marine environmental covariates via the datamatch package, optionally
    extended with covariates derived from the covariate grid - gradients, fronts,
    lags, and flow diagnostics - via the derivoce package, classified against the
    threshold, and modeled with a tidymodels workflow. Fitted models are
    projected to monthly habitat suitability maps. Species, covariates, thresholds,
    study area, and model settings are all driven by a YAML config rather than code
    edits. Rebuilt from the biomod2-based pipeline of Ross et al. (2023).
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends:
    R (>= 4.1)
Imports:
    datamatch,
    dplyr,
    ggplot2,
    parallel,
    parsnip,
    recipes,
    rsample,
    rlang,
    readr,
    sf,
    terra,
    tibble,
    tune,
    workflows,
    yaml,
    yardstick
Suggests:
    derivoce,
    fancyfx,
    knitr,
    leaflet,
    ranger,
    xgboost,
    mgcv,
    marmap,
    patchwork,
    rmarkdown,
    shiny,
    shinyFiles,
    rnaturalearth,
    testthat (>= 3.0.0),
    withr
Remotes:
    chross22/datamatch,
    chross22/derivoce,
    chross22/fancyfx
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/chross22/taupatch, https://camilleross.org/taupatch/
BugReports: https://github.com/chross22/taupatch/issues
Config/roxygen2/version: 8.1.0