Merge branch 'main' into homo-nuclei-assignments-highlight

Author: hamed-musallam

.github/workflows/e2e.yml

@@ -25,7 +25,7 @@ jobs:
       - name: Build test application
         env:
           NODE_OPTIONS: --max-old-space-size=3072
-        run: npm run build-no-minify
+        run: node --run build-no-minify
       - name: Run E2E tests on ${{ matrix.project }}
         run: npx playwright test --project ${{ matrix.project }}
         continue-on-error: ${{ matrix.project == 'webkit' }}

.github/workflows/nodejs.yml

@@ -24,7 +24,7 @@ jobs:
           node-version-file: package.json
       - run: npm ci
       - name: Run Knip
-        run: npm run knip
+        run: node --run knip
   stylelint:
     runs-on: ubuntu-latest
     steps:
@@ -35,4 +35,4 @@ jobs:
       - name: Install dependencies
         run: npm ci
       - name: Run Stylelint
-        run: npm run stylelint
+        run: node --run stylelint

.github/workflows/npm-prerelease.yml

@@ -1,5 +1,27 @@
 # Changelog
 
+## [1.4.0](https://github.com/cheminfo/nmrium/compare/v1.3.0...v1.4.0) (2025-10-09)
+
+
+### Features
+
+* add yellow highlight to assigned 2D signals ([c39c27b](https://github.com/cheminfo/nmrium/commit/c39c27bd55d5498f6c7046665d4a475ad08d511e)), closes [#3718](https://github.com/cheminfo/nmrium/issues/3718)
+* CT exports with alias atoms ([e777d01](https://github.com/cheminfo/nmrium/commit/e777d017d90fae940d96f8b385aacf1cd7c15a96))
+* improve export publication string options ([#3677](https://github.com/cheminfo/nmrium/issues/3677)) ([8f134c5](https://github.com/cheminfo/nmrium/commit/8f134c58e793a46221a76e7351c2ec0055ebb93b))
+* position the ranges assignment popup near the cursor ([fcd2015](https://github.com/cheminfo/nmrium/commit/fcd2015712e9232e338896c54064cdc791e6c099))
+
+
+### Bug Fixes
+
+* clear structure query should reset hexagon icon state ([e916fec](https://github.com/cheminfo/nmrium/commit/e916fec3a6db0db7a9aefb80e1e1bf5a6a255e5b))
+* correctly assign both x and y axes in 2D ([76fdc89](https://github.com/cheminfo/nmrium/commit/76fdc89131c980f18fbb904642e9934a5ca5eb7a))
+* correctly position zone assignment popup ([ce43d72](https://github.com/cheminfo/nmrium/commit/ce43d723835eac5d2e661c2ea5ba656452626423))
+* debounce and set peak picking minMaxRatio default to 0.01 ([1a454e5](https://github.com/cheminfo/nmrium/commit/1a454e5ffb144e92c1ded8f4cd188e113551f2e1))
+* only render dialog contents styles with fallback ([#3746](https://github.com/cheminfo/nmrium/issues/3746)) ([df969c6](https://github.com/cheminfo/nmrium/commit/df969c608c3671c3978e5ad820692d16a63dd2e0))
+* prevent duplicate entries in export and import menus ([a9ddcfc](https://github.com/cheminfo/nmrium/commit/a9ddcfc6e652e605e1d4c5e3e93a596b8d25688b)), closes [#3715](https://github.com/cheminfo/nmrium/issues/3715)
+* recalculate ranges integrations when sum changes ([97a1387](https://github.com/cheminfo/nmrium/commit/97a1387ac281af9c995ebbff135d7e034f9f5ab7))
+* revert auto peak-picking threshold to 0.05 ([#3747](https://github.com/cheminfo/nmrium/issues/3747)) ([3aca81e](https://github.com/cheminfo/nmrium/commit/3aca81edda93df64bec36b50d25e989a05d5c52f))
+
 ## [1.3.0](https://github.com/cheminfo/nmrium/compare/v1.2.1...v1.3.0) (2025-09-02)
 
 

.github/workflows/publish.yml

@@ -67,7 +67,7 @@ The test file's name should end with `.test.{js,jsx,ts,tsx}`.
 
 For example, tests for the file located in `src/data/data1d/autoPeakPicking.js` should be written in `src/data/data1d/__tests__/autoPeakPicking.test.js`.
 
-You can run all unit tests with `npm run test-only`.
+You can run all unit tests with `node --run test-only`.
 
 ### End-to-end tests
 
@@ -76,9 +76,9 @@ End-to-end (e2e) tests are written in the [`test-e2e` directory](https://github.
 We use [Playwright](https://playwright.dev/docs/intro/) to write and run the tests
 in real browsers.
 
-You can run all e2e tests with `npm run test-e2e`.
-Note that to test your latest changes, the dev server should be running (`npm run dev`).
-Otherwise, the last unminified production build from `npm run build-no-minify` will be used.
+You can run all e2e tests with `node --run test-e2e`.
+Note that to test your latest changes, the dev server should be running (`node --run dev`).
+Otherwise, the last unminified production build from `node --run build-no-minify` will be used.
 
 ## Useful links
 

CHANGELOG.md

@@ -1,43 +1,46 @@
 {
   "name": "nmrium",
   "description": "React component to display and process nuclear magnetic resonance (NMR) spectra.",
-  "version": "1.3.0",
+  "version": "1.4.0",
   "license": "MIT",
   "type": "module",
   "exports": {
-    ".": "./lib/component/main/index.js"
+    ".": {
+      "nmrium-internal": "./src/component/main/index.ts",
+      "default": "./lib/component/main/index.js"
+    }
   },
   "files": [
     "lib",
     "src"
   ],
   "scripts": {
-    "build": "vite build --outDir build",
-    "cspell": "cspell lint \"**/*.tsx\"",
-    "postbuild": "rm build/data/cytisine/2d/HMBC_Cytisin_RI+FT.dx && rm build/data/cytisine/2d/HSQC_Cytisin_RI+FT.dx",
-    "build-cloudflare": "npm run set-version-sha && npm run build-with-profiling && npm run copy-samples-toc",
-    "build-no-minify": "cross-env NO_MINIFY=true npm run build",
-    "build-with-profiling": "cross-env WITH_PROFILING=true NO_MINIFY=true npm run build",
+    "build": "vite build --outDir build && node --run build-clean",
+    "build-clean": "rm build/data/cytisine/2d/HMBC_Cytisin_RI+FT.dx && rm build/data/cytisine/2d/HSQC_Cytisin_RI+FT.dx",
+    "build-cloudflare": "node --run set-version-sha && node --run build-with-profiling && node --run copy-samples-toc",
+    "build-no-minify": "cross-env NO_MINIFY=true node --run build",
+    "build-with-profiling": "cross-env WITH_PROFILING=true NO_MINIFY=true node --run build",
     "check-types": "tsc --noEmit",
     "compile": "tsc --project tsconfig.build.json",
     "copy-samples-toc": "cp src/demo/samples.json build/",
     "clean-lib": "rimraf lib",
+    "cspell": "cspell lint \"**/*.tsx\"",
     "dev": "vite --host localhost --port 3000 --open",
     "eslint": "eslint . --cache",
-    "eslint-fix": "npm run eslint -- --fix",
+    "eslint-fix": "node --run eslint -- --fix",
     "install:clean": "rm -rf node_modules/ && rm -rf package-lock.json && npm install && npm start",
     "knip": "knip",
     "playwright": "playwright test --ui",
-    "prepack": "npm run clean-lib && npm run compile",
-    "prepublishOnly": "npm run set-version-npm",
+    "prepack": "node --run clean-lib && node --run compile",
+    "prepublishOnly": "node --run set-version-npm",
     "prettier": "prettier --check src test-e2e",
     "prettier-write": "prettier --write src test-e2e",
     "set-version-npm": "VERSION=$(jq .version package.json | tr -d '\"') && echo \"export default { version: 'v$VERSION' };\" > src/versionInfo.ts",
     "set-version-sha": "SHA=$(git rev-parse HEAD) && echo \"export default { version: 'git-$SHA' };\" > src/versionInfo.ts",
-    "start": "npm run dev",
+    "start": "node --run dev",
     "stylelint": "stylelint \"**/*.{css,tsx}\"",
-    "stylelint-fix": "npm run stylelint -- --fix",
-    "test": "npm run test-only && npm run check-types && npm run eslint && npm run prettier && npm run stylelint && npm run knip && npm run build-no-minify && npm run test-e2e",
+    "stylelint-fix": "node --run stylelint -- --fix",
+    "test": "node --run test-only && node --run check-types && node --run eslint && node --run prettier && node --run stylelint && node --run knip && node --run build-no-minify && node --run test-e2e",
     "test-only": "vitest run --coverage",
     "test-e2e": "playwright test --project chromium",
     "test-e2e-server": "serve -l tcp://localhost:3000 build"

README_DEV.md

@@ -1,4 +1,4 @@
-import type { ViewportSize} from '@playwright/test';
+import type { ViewportSize } from '@playwright/test';
 import { defineConfig, devices } from '@playwright/test';
 
 const viewportOverride: ViewportSize = {
@@ -28,8 +28,8 @@ export default defineConfig({
   },
   webServer: {
     command: process.env.CI
-      ? 'npm run test-e2e-server'
-      : 'npm run dev -- --no-open',
+      ? 'node --run test-e2e-server'
+      : 'node --run dev -- --no-open',
     port: 3000,
     reuseExistingServer: true,
   },

package-lock.json

@@ -38,14 +38,6 @@ function stopPropagation(e: any) {
   e.stopPropagation();
 }
 
-function keyDownCheck(event: React.KeyboardEvent<HTMLInputElement>) {
-  if (event.key === 'Enter') {
-    return true;
-  } else if (event.key === 'Escape') {
-    return false;
-  }
-}
-
 export function FieldEdition(props: FieldEditionsProps) {
   const { value, inputType = 'text', onChange, children, PopoverProps } = props;
   const [isOpen, setIsOpen] = useState(false);
@@ -84,7 +76,7 @@ function Field(props: FieldProps) {
   });
 
   function handleKeyDown(event: React.KeyboardEvent<HTMLInputElement>) {
-    if (keyDownCheck(event)) {
+    if (event.key === 'Enter') {
       void handleSubmit(onChange)();
     }
   }