software.txt

Graph libraries and other related software tools
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https://github.com/jgrapht/jgrapht
https://github.com/kevin-wayne/algs4
https://github.com/jrtom/jung
https://github.com/google/guava/tree/master/guava/src/com/google/common/graph
https://github.com/google/guava/wiki/GraphsExplained

https://gephi.org/users/supported-graph-formats/
https://wiki.sagemath.org/graph_survey

NetworkX
https://networkx.org/
https://github.com/networkx/networkx/tree/main/networkx/algorithms

NetworKit
https://networkit.github.io/index.html

C++
BGL https://www.boost.org/doc/libs/1_80_0/libs/graph/doc/index.html
KOALA https://github.com/krzysztof-turowski/koala-networkit
Lemon https://lemon.cs.elte.hu/trac/lemon

iGraph C https://igraph.org/c/doc/
iGraph R https://igraph.org/r/doc/

Rust
https://github.com/petgraph/petgraph

.NET
https://github.com/YaccConstructor/QuickGraph/tree/master/src/QuickGraph/Algorithms

teexGraph (diameter)
https://github.com/franktakes/teexgraph

Stanford Large Network Dataset Collection
https://snap.stanford.edu/data/

Nauty, traces (isomorphism)
https://pallini.di.uniroma1.it/
https://www3.cs.stonybrook.edu/~algorith/implement/nauty/implement.shtml

R Plots
https://sites.harding.edu/fmccown/r/

FastUtils
https://github.com/vigna/fastutil

Linear regression
https://algs4.cs.princeton.edu/code/edu/princeton/cs/algs4/LinearRegression.java.html