QC metrics output as data frames

[wyu]

Is there a way to save the QC metric as data frames, in addition to the PDF/html report? We'd like to save them for longitudinal tracking purpose.

Wen

[cbielow]

this is coming up soonish.
Until then, you can try to extract the data from the ggplot objects, which are stored in the list of metrics.
You need to modify the package code for this, though

[jw-houghton]

Is there any update on this?

[cbielow]

I have started to implement mzQC output. The framework is ready, and there is currently one metric being exported.
It should be easy now to export more data. Contributions welcome!

[wyu]

Very exciting to see the mzQC implementation! Are we limited by the vocabularies defined in the standard or we can put anything you have in PTXQC?

Thanks!
Wen

[cbielow]

sorry, missed your question :/
Ideally, what we export is in the PSI-MS CV. If something is missing there, its very easy to add (just a PR, which is usually handled very quickly), or if you plan to use the mzQC in-house only, then you can use unofficial CV's as well.

[cbielow]

There is a grant application running ATM, which will hopefully allow us to implement the full set of metrics for mzQC. Fingers crossed. (and contributions still welcome :))