Hi
I have ATAC-seq data of two samples with and without treatment. I am interested to understand what kind of hematopoietic traits are associated with variable accessibility, so I ran the gchromVAR. I was able to get the information on traits which are showing variable accessibility between the conditions. I am assuming it's taking the mean of gchromVAR scores for a given set of regions associated with that trait and generating the data. Is there a way to retrieve these regions? I think I am missing out on the peaks information in the final output dataset of gchromVAR
Thanks!
Hi
I have ATAC-seq data of two samples with and without treatment. I am interested to understand what kind of hematopoietic traits are associated with variable accessibility, so I ran the gchromVAR. I was able to get the information on traits which are showing variable accessibility between the conditions. I am assuming it's taking the mean of gchromVAR scores for a given set of regions associated with that trait and generating the data. Is there a way to retrieve these regions? I think I am missing out on the peaks information in the final output dataset of gchromVAR
Thanks!