Hi,
Does the bam file for bap2 input require the reads been duplicates marked, e.g., using Picard to mark the dups but not remove dups? What if I don't run mark dup, the bap2 process will generate some issues, e.g., the jaccard index computations will be too much off?
Thanks a lot!
Yu
Hi,
Does the bam file for bap2 input require the reads been duplicates marked, e.g., using Picard to mark the dups but not remove dups? What if I don't run mark dup, the bap2 process will generate some issues, e.g., the jaccard index computations will be too much off?
Thanks a lot!
Yu