🚀 Feature Request
📝 Feature Description
A clear and concise description of the feature you'd like to see implemented.
Support for other PICRUSt2 outputs such as BIGG, CAZY, PFAM, etc.
🎯 Problem Statement
What problem would this feature solve? What use case does it address?
💡 Proposed Solution
Describe your proposed solution or implementation approach:
Not sure.. Maybe use their respective databases?
📊 Use Case Examples
Provide specific examples of how this feature would be used:
For the pathway parameter of ggpicrust2 function, you could use a character, consisting of "EC", "KO", "MetaCyc" AND "BIGG", "CAZY", etc.
# Example of how the proposed feature might work
# (this is just pseudocode/example)
library(ggpicrust2)
results_data_input <- ggpicrust2(data = abundance_data,
metadata = metadata,
group = "your_group_column",
pathway = "CAZY",
daa_method = "LinDA",
ko_to_kegg = "TRUE",
order = "pathway_class",
p_values_bar = TRUE,
x_lab = "pathway_name")
🔄 Related Functions
Which existing functions would this relate to or modify?
🎨 Visualization Enhancement (if applicable)
If this is a visualization feature:
🔬 Scientific Context
How would this feature benefit microbiome research or PICRUSt2 analysis workflows?
Other important pathways such as CAzymes.
📚 Alternative Solutions
Have you considered any alternative approaches or workarounds?
No. I really like ggpicrust2 and would love to see this feature implemented.
📖 Additional References
References:
(Please include links to papers, other tools, or community discussions)
✅ Implementation Considerations
🔄 Priority Level
How critical is this feature for your work?
📝 Additional Context
Add any other context, mockups, or examples about the feature request here.
🚀 Feature Request
📝 Feature Description
A clear and concise description of the feature you'd like to see implemented.
Support for other PICRUSt2 outputs such as BIGG, CAZY, PFAM, etc.
🎯 Problem Statement
What problem would this feature solve? What use case does it address?
💡 Proposed Solution
Describe your proposed solution or implementation approach:
Not sure.. Maybe use their respective databases?
📊 Use Case Examples
Provide specific examples of how this feature would be used:
For the pathway parameter of ggpicrust2 function, you could use a character, consisting of "EC", "KO", "MetaCyc" AND "BIGG", "CAZY", etc.
🔄 Related Functions
Which existing functions would this relate to or modify?
pathway_daa()pathway_errorbar()pathway_heatmap()pathway_pca()ggpicrust2()🎨 Visualization Enhancement (if applicable)
If this is a visualization feature:
🔬 Scientific Context
How would this feature benefit microbiome research or PICRUSt2 analysis workflows?
Other important pathways such as CAzymes.
📚 Alternative Solutions
Have you considered any alternative approaches or workarounds?
No. I really like ggpicrust2 and would love to see this feature implemented.
📖 Additional References
References:
(Please include links to papers, other tools, or community discussions)
✅ Implementation Considerations
🔄 Priority Level
How critical is this feature for your work?
📝 Additional Context
Add any other context, mockups, or examples about the feature request here.