EdgeMap/pyproject.toml at main · cafferychen777/EdgeMap · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
[build-system]
# Keep built distributions on Metadata-Version 2.4 until release validators
# accept Metadata-Version 2.5.
requires = ["hatchling>=1.27,<1.32"]
build-backend = "hatchling.build"

[project]
name = "edgemap"
version = "0.3.0"
description = "Heritability mapping with spatially informed ligand-receptor gene annotations"
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
authors = [
    { name = "Chen Yang", email = "cafferychen777@tamu.edu" },
    { name = "Xianyang Zhang", email = "zhangxiany@stat.tamu.edu" },
    { name = "Jun Chen", email = "Chen.Jun2@mayo.edu" },
]
keywords = [
    "spatial transcriptomics",
    "GWAS",
    "heritability",
    "cell-cell communication",
    "statistical genetics",
    "bioinformatics",
]
classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "License :: OSI Approved :: MIT License",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "numpy>=1.24",
    "pandas>=2.0",
    "pyarrow>=12.0",
    "scipy>=1.10",
    "anndata>=0.9",
    "scanpy>=1.9",
    "scikit-learn>=1.2",
]

[project.urls]
Homepage = "https://github.com/cafferychen777/EdgeMap"
Repository = "https://github.com/cafferychen777/EdgeMap"
Issues = "https://github.com/cafferychen777/EdgeMap/issues"
Changelog = "https://github.com/cafferychen777/EdgeMap/blob/main/CHANGELOG.md"

[project.scripts]
edgemap = "edgemap.cli:main"

[tool.hatch.build.targets.wheel]
packages = ["src/edgemap"]
exclude = [
    # These experimental modules are present in some development worktrees but
    # are not part of the reviewed public release API.
    "src/edgemap/genetic_response.py",
    "src/edgemap/response.py",
    "src/edgemap/simulation.py",
]

[tool.hatch.build.targets.sdist]
include = [
    "src/edgemap",
    "README.md",
    "LICENSE",
    "CHANGELOG.md",
    "CITATION.cff",
    "pyproject.toml",
]
exclude = [
    "/data",
    "/results",
    "/paper",
    "/scripts",
    "/quickstart",
    "/reproducibility",
    "/tmp",
    "**/node_modules",
    "src/edgemap/genetic_response.py",
    "src/edgemap/response.py",
    "src/edgemap/simulation.py",
    ".playwright-mcp",
    ".coverage",
    ".pytest_cache",
    ".ruff_cache",
]

[tool.pytest.ini_options]
testpaths = ["tests"]