Hello,
I'm trying to run the following code, as an example out of the manuals, with only one change of the cancer study to be row 4 meaning 'laml_tcga_pan_can_atlas_2018'. The getGeneticProfiles fails with this input, as with any other cancer type ending with '_tcga_pan_can_atlas_2018'.
mycgds = CGDS("http://www.cbioportal.org/")
# Get list of cancer studies at server
getCancerStudies(mycgds)
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy = getCancerStudies(mycgds)[4,1]
mycaselist = getCaseLists(mycgds,mycancerstudy)[1,1]
# Get available genetic profiles
mygeneticprofile = getGeneticProfiles(mycgds,mycancerstudy)[1,1]
Hello,
I'm trying to run the following code, as an example out of the manuals, with only one change of the cancer study to be row 4 meaning 'laml_tcga_pan_can_atlas_2018'. The getGeneticProfiles fails with this input, as with any other cancer type ending with '_tcga_pan_can_atlas_2018'.