references.bib

@ARTICLE{Schindelin2012-di,
  title = {Fiji: an open-source platform for biological-image analysis},
  author = {Schindelin, Johannes and Arganda-Carreras, Ignacio and Frise, Erwin
  and Kaynig, Verena and Longair, Mark and Pietzsch, Tobias and Preibisch,
  Stephan and Rueden, Curtis and Saalfeld, Stephan and Schmid, Benjamin and
  Tinevez, Jean-Yves and White, Daniel James and Hartenstein, Volker and
  Eliceiri, Kevin and Tomancak, Pavel and Cardona, Albert},
  journaltitle = {Nat. Methods},
  publisher = {Springer Science and Business Media LLC},
  volume = {9},
  issue = {7},
  pages = {676--682},
  date = {2012-06-28},
  doi = {10.1038/nmeth.2019},
  pmc = {PMC3855844},
  pmid = {22743772},
  issn = {1548-7091,1548-7105},
  url = {http://dx.doi.org/10.1038/nmeth.2019},
  keywords = {Brachiopod segmentation/Manuscript;- Projects/Cephalic furrow
  mechanics;- Projects/Brachiopod wnt landscape;- Projects/MorphoEvo
  proposal;Light-Sheet Image Analysis Workshop 2026},
  language = {en}
}

@ARTICLE{Girstmair2025-qd,
  title = {Mastodon: The command center for large-scale lineage-tracing
  microscopy datasets},
  author = {Girstmair, Johannes and Pietzsch, Tobias and Ulman, Vladimir and
  Hahmann, Stefan and Arzt, Matthias and Handberg-Thorsager, Mette and Sugawara,
  Ko and Pantze, Samuel and Haase, Robert and Tinevez, Jean-Yves and Tomancak,
  Pavel},
  journaltitle = {bioRxiv},
  institution = {bioRxiv},
  pages = {2025.12.10.693416},
  date = {2025-12-12},
  doi = {10.64898/2025.12.10.693416},
  url = {https://www.biorxiv.org/content/10.64898/2025.12.10.693416v1.abstract},
  urldate = {2025-12-13},
  keywords = {Light-Sheet Image Analysis Workshop 2026},
  language = {en}
}

@IMAGE{Girstmair2024-iv,
  title = {Mastodon Auto-Tracking Demo on {\textit{Parhyale hawaiensis}} Limb
  Development},
  author = {Girstmair, Johannes},
  publisher = {Zenodo},
  date = {2024},
  doi = {10.5281/ZENODO.13944688},
  url = {https://zenodo.org/doi/10.5281/zenodo.13944688},
  urldate = {2025-12-29},
  keywords = {Mastodon; Tracking; Parhyale; Lightsheet}
}

@ARTICLE{Wolff2018-fr,
  title = {Multi-view light-sheet imaging and tracking with the MaMuT software
  reveals the cell lineage of a direct developing arthropod limb},
  author = {Wolff, Carsten and Tinevez, Jean-Yves and Pietzsch, Tobias and
  Stamataki, Evangelia and Harich, Benjamin and Guignard, Léo and Preibisch,
  Stephan and Shorte, Spencer and Keller, Philipp J and Tomancak, Pavel and
  Pavlopoulos, Anastasios},
  journaltitle = {Elife},
  volume = {7},
  date = {2018-03-29},
  doi = {10.7554/eLife.34410},
  pmc = {PMC5929908},
  pmid = {29595475},
  issn = {2050-084X},
  url = {http://dx.doi.org/10.7554/eLife.34410},
  keywords = {Parhyale hawaiensis; amphipods; appendage development; cell
  lineage; crustaceans; developmental biology; limb morphogenesis; stem cells},
  language = {en}
}