Issues

support non-CBRB processing
broadinstitute/mccarroll_nextflow#99 · opened on Sep 30, 2026
WRITE_PROPERTIES should not require a VM
broadinstitute/mccarroll_nextflow#98 · opened on Sep 28, 2026
keep .nf-core.yml up to date
broadinstitute/mccarroll_nextflow#97 · opened on Sep 28, 2026
FileUtil.nf cleanup
broadinstitute/mccarroll_nextflow#96 · opened on Sep 28, 2026
add validation to function collectInOrder
broadinstitute/mccarroll_nextflow#95 · opened on Sep 28, 2026
processes that output sparse-matrix file triplet should emit together as a tuple
broadinstitute/mccarroll_nextflow#94 · opened on Sep 28, 2026
Use patches for source-level nf-core customizations
broadinstitute/mccarroll_nextflow#93 · opened on Sep 28, 2026
Standardize module interfaces
broadinstitute/mccarroll_nextflow#92 · opened on Sep 28, 2026
Add meaningful task tags
broadinstitute/mccarroll_nextflow#91 · opened on Sep 28, 2026
Set java heap size for all Drop-seq java tool invocations
broadinstitute/mccarroll_nextflow#90 · opened on Sep 28, 2026
Dynamically determine STAR index directory
broadinstitute/mccarroll_nextflow#89 · opened on Sep 28, 2026
ReferenceMetadataLocator improvements
broadinstitute/mccarroll_nextflow#88 · opened on Sep 28, 2026
1
add test profiles
broadinstitute/mccarroll_nextflow#87 · opened on Sep 28, 2026
get nf-core schema working
broadinstitute/mccarroll_nextflow#86 · opened on Sep 28, 2026
Decide what to do about other running tasks when one task fails.
broadinstitute/mccarroll_nextflow#85 · opened on Sep 28, 2026
Don't access params in subworkflows
broadinstitute/mccarroll_nextflow#84 · opened on Sep 28, 2026
Capture version info for all tools
broadinstitute/mccarroll_nextflow#83 · opened on Sep 28, 2026
eliminate SENDGRID for email in favor of in-head-node sendMail
broadinstitute/mccarroll_nextflow#81 · opened on Sep 28, 2026