diff --git a/organise_desktop/Cli.py b/organise_desktop/Cli.py
old mode 100644
new mode 100755
index c40927f..031da93
--- a/organise_desktop/Cli.py
+++ b/organise_desktop/Cli.py
@@ -4,6 +4,7 @@
 import os
 import sys
 import json
+import click
 
 pwd = os.path.dirname(os.path.abspath(__file__))
 
@@ -11,80 +12,72 @@
 
 folders = [x for x in Extensions]
 
-def print_usage():
+@click.command()
+@click.option(
+    "--undosort",
+    "-u",
+    is_flag=True,
+    help="Undo changes that were made.",
+)
+@click.option(
+    "--sched",
+    "-s",
+    is_flag=True,
+    help="Schedule an organization process to run."
+)
+@click.option(
+    "--desched",
+    "-d",
+    is_flag=True,
+    help="Remove a scheduled organization process."
+)
+@click.option(
+    "--ignore",
+    "-i",
+    type=str,
+    multiple=True,
+    help="Identify which file extension to exclude from organization. This should be passed for each file extension."
+)
+def cli(
+    undosched,
+    sched,
+    desched,
+    ignore
+):
     """
-        Prints usage of the Command Line interface
+    This is used to call a command line interface.
     """
-    print("Usage: " + sys.argv[0] + " <argument>")
-    print("-h                                 -- Display help message.")
-    print("-u                                 -- Undo")
-    print("-c --all                           -- Clean. If given --all then cleans all otherwise prompts")
-    print("-s --r                             -- start a schedule. removes a schedule if --r given")
+    if undosort:
+        undo()
 
-if __name__ == '__main__':
-    
-    if len(sys.argv) <= 1:
-        print_usage()
+    elif sched:
+        schedule_start(folders)
 
-    elif sys.argv[1] == '-h':
-        print_usage()
+    elif desched:
+        schedule_end()
 
-    elif sys.argv[1] == '-u':
-        undo()
-        sys.exit()
+    elif ignore:
+
+        tmp_ext_list = []
+        for i in ignore: # Create a tuple with all the given extensions
+            tmp_ext_list.extend(i.split(','))
 
-    elif sys.argv[1] == '-c':
-        
-        if len(sys.argv) == 3:
-            
-            if sys.argv[2] == '--all':
-                organise_desktop(Extensions)
-                sys.exit()
-                
-            else:
-                print("Invalid input")
-                sys.exit()    
-            
-        elif len(sys.argv) == 2:
-            for x in enumerate(folders):
-                print('{} - {}'.format(x[0], x[1]))
-                
-            try:    
-                exclude = input("Enter indexes of types to EXCLUDE\nEnter multiple by separating by a ,:\n")
-            except KeyboardInterrupt:
-                sys.exit()
+        extension_tuple = tuple([ # add periods to the start of extensions if not already there
+            x if x[0] == '.' else f".{x}" for x in tmp_ext_list
+        ])
 
-            exclude_list = [int(i) for i in exclude.split(',')]
-            to_clean = {}
-            
-            for i in range(len(folders)):
-                if i not in exclude_list:
-                    to_clean[folders[i]] = Extensions[folders[i]]
-                    
-                    
-            organise_desktop(to_clean)
-            
-            sys.exit()
-        
-        else:
-            print("Invalid Input")
-            sys.exit()
+        to_clean = { # create a dict that doesn't include the provided extensions, based on the extensions in the json file
+            category: [
+                extension for extension in Extensions[category] if extension not in extension_tuple
+            ] for category in Extensions
+        }
 
-    elif sys.argv[1] == "-s":
-        
-        if len(sys.argv) == 2:
-            print("Starting schedule..")
-            schedule_start(folders)
-            
-        elif sys.argv[2] == '--r':
-            print("Removing schedule..")
-            schedule_end()
-            
-        else:
-            print("Invalid Input")
-            sys.exit()    
+        organise_desktop(to_clean)
 
     else:
-        print("Invalid Input")
-        sys.exit()            
-        
+        organise_desktop(Extensions)
+
+    sys.exit()
+
+if __name__ == '__main__':
+    cli()
diff --git a/requirements.txt b/requirements.txt
index 91a2e07..440875e 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -9,3 +9,4 @@ requests==2.18.4
 six==1.11.0
 urllib3==1.22
 urwid==2.0.1
+Click>=7.0