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In ~/knockoffs/400phenotypes-part1.ipynb on Sherlock, I have some code to compute group representatives only on the typed variants. Putting this here in case I forget.
Some VCF files might have imputed SNPs.
In
~/knockoffs/400phenotypes-part1.ipynbon Sherlock, I have some code to compute group representatives only on the typed variants. Putting this here in case I forget.