pyproject.toml

[build-system]
requires = ["setuptools>=64", "setuptools-scm>=8"]
build-backend = "setuptools.build_meta"

[project]
name = "speech-decoding"
version = "0.1.0"
description = "Cross-patient speech decoding from intra-operative uECOG"
requires-python = ">=3.12,<3.13"
dependencies = [
    "torch>=2.0",
    "mne>=1.6",
    "mne-bids>=0.14",
    "numpy>=1.24",
    "scipy>=1.11",
    "scikit-learn>=1.3",
    "pyyaml>=6.0",
    "h5py>=3.9",
    "tqdm>=4.65",
    "transformers>=4.40",
    "neuralset>=0.1.0",
    "nibabel>=5.1",
    "pandas>=2.2",
    "hdf5plugin>=6.0.0",
    "hf-xet>=1.4.2",
    "psutil>=7.2.2",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.4",
    "pytest-cov>=4.1",
]

[tool.setuptools.packages.find]
where = ["src"]

[tool.pytest.ini_options]
testpaths = ["src"]
# Default run EXCLUDES `slow`. A CLI `-m` overrides this entirely (pytest takes the last
# -m, it does not AND them), so `scripts/dcc/dispatch`'s `-m must_pass_before_dispatch`
# gate still runs its slow members. Run everything with `-m ""`; run only the slow ones
# with `-m slow`.
addopts = "-m 'not slow'"
markers = [
    "slow: loads real BIDS data OR trains a model from scratch on CPU. Deselected by default (addopts); re-run with '-m slow', or the whole suite with '-m \"\"'.",
    "must_pass_before_dispatch: pre-dispatch gate (SCAFFOLD-07, B18 closure-gate). Run by `scripts/dcc/dispatch` before sync; aborts on failure.",
]