clop/pyproject.toml at main · baudrly/clop · GitHub

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[project]
name = "clop"
description = "Contrastive Language Omics Pre-training"
authors = [
  { name = "baudrly" },
  { name = "cmdoret" },
]
license = { text = "MIT" }
license-files = ["LICEN[CS]E*"]
readme = "README.md"
requires-python = ">=3.11,<3.12"
dynamic = ["version"]
dependencies = [
  "fpdf2",
  "matplotlib",
  "numpy",
  "pandas",
  "pygments",
  "scikit-learn",
  "seaborn",
  "torch",
]

[project.optional-dependencies]
webapp = ["tensorflow", "tensorflowjs"]
onnx = ["onnx", "onnxruntime", "onnx-tf"]

[dependency-groups]
dev = [
  "ruff",
  "pre-commit",
  "pytest",
]

[project.scripts]
clop = "clop.clop:main"

[project.urls]
Homepage = "https://github.com/baudrly/clop"

[tool.ruff]
# Allow lambda functions
lint.ignore = ["E731"]
line-length = 79

[tool.pytest.ini_options]
addopts = ["--doctest-modules"]
testpaths = ["clop", "tests"]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.version]
path = "src/clop/__init__.py"
pattern = '__version__ = "(?P<version>[^"]+)"'

[tool.hatch.build.targets.wheel]
packages = ["src/clop"]