Hello all,
Thank you for this repository!
I am writing with some issues that were flagged for particular networks when I read them into R using igraph::read_graph(). There are 90 networks that, in at least some cases, prevent them reading into R. I can manually go through these at some point, if I need them for my work. Yet, I thought it prudent to post here in case someone has already encountered these errors or if their correction would be beneficial in the long run.
File Error
1 Network_1117.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
2 Network_1183.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
3 Network_1191.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
4 Network_319.graphml Duplicate attribute name found: 'MicrobialDiv' (for <key id='d6'>). Parse error\nSource: io/graphml.c:800
5 Network_320.graphml Duplicate attribute name found: 'MicrobialDiv' (for <key id='d6'>). Parse error\nSource: io/graphml.c:800
6 Network_326.graphml Duplicate attribute name found: 'Clustering coefficient ' (for <key id='d4'>). Parse error\nSource: io/graphml.c:800
7 Network_327.graphml Duplicate attribute name found: 'Clustering coefficient ' (for <key id='d4'>). Parse error\nSource: io/graphml.c:800
8 Network_334.graphml Duplicate attribute name found: 'Weight (kg)' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
9 Network_357.graphml Duplicate attribute name found: 'Number litters sired by a male who sired an earlier successful litter' (for <key id='d3'>). Parse error\nSource: io/graphml.c:800
10 Network_358.graphml Duplicate attribute name found: 'Number litters sired by a male who sired an earlier successful litter' (for <key id='d3'>). Parse error\nSource: io/graphml.c:800
11 Network_359.graphml Duplicate attribute name found: 'Number litters sired by a male who sired an earlier successful litter' (for <key id='d3'>). Parse error\nSource: io/graphml.c:800
12 Network_362.graphml Duplicate attribute name found: 'Rank (Nov 2008-Jun 2009)' (for <key id='d4'>). Parse error\nSource: io/graphml.c:800
13 Network_363.graphml Duplicate attribute name found: 'Rank (Nov 2008-Jun 2009)' (for <key id='d4'>). Parse error\nSource: io/graphml.c:800
14 Network_511.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
15 Network_530.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
16 Network_533.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
17 Network_561.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
18 Network_598.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
19 Network_628.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
20 Network_632.graphml Keys in a trie cannot be empty. Invalid value\nSource: core/trie.c:303
21 Network_677.graphml Duplicate attribute name found: 'Rank (in respective fatted/non-fatted group)' (for <key id='d6'>). Parse error\nSource: io/graphml.c:800
22 Network_682.graphml Duplicate attribute name found: 'coef.activity' (for <key id='d1'>). Parse error\nSource: io/graphml.c:800
23 Network_685.graphml Duplicate attribute name found: 'coef.activity' (for <key id='d1'>). Parse error\nSource: io/graphml.c:800
24 Network_686.graphml Duplicate attribute name found: 'Male rank' (for <key id='d3'>). Parse error\nSource: io/graphml.c:800
25 Network_694.graphml Duplicate attribute name found: 'male dominance index' (for <key id='d7'>). Parse error\nSource: io/graphml.c:800
26 Network_695.graphml Duplicate attribute name found: 'male dominance index' (for <key id='d7'>). Parse error\nSource: io/graphml.c:800
27 Network_696.graphml Duplicate attribute name found: 'male dominance index' (for <key id='d7'>). Parse error\nSource: io/graphml.c:800
28 Network_697.graphml Duplicate attribute name found: 'male dominance index' (for <key id='d7'>). Parse error\nSource: io/graphml.c:800
29 Network_698.graphml Duplicate attribute name found: 'male dominance index' (for <key id='d7'>). Parse error\nSource: io/graphml.c:800
30 Network_700.graphml Duplicate attribute name found: 'std_P' (for <key id='d14'>). Parse error\nSource: io/graphml.c:800
31 Network_715.graphml Duplicate attribute name found: 'std_ave_remating' (for <key id='d19'>). Parse error\nSource: io/graphml.c:800
32 Network_719.graphml Duplicate attribute name found: 'testis length (mm)' (for <key id='d5'>). Parse error\nSource: io/graphml.c:800
33 Network_725.graphml Duplicate attribute name found: 'Year cubs born' (for <key id='d3'>). Parse error\nSource: io/graphml.c:800
34 Network_726.graphml Duplicate attribute name found: 'no. males that visted female' (for <key id='d1'>). Parse error\nSource: io/graphml.c:800
35 Network_930.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
36 Network_931.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
37 Network_932.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
38 Network_933.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
39 Network_934.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
40 Network_935.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
41 Network_936.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
42 Network_937.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
43 Network_938.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
44 Network_939.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
45 Network_940.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
46 Network_941.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
47 Network_942.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
48 Network_943.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
49 Network_944.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
50 Network_945.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
51 Network_946.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
52 Network_947.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
53 Network_948.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
54 Network_949.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
55 Network_950.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
56 Network_951.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
57 Network_952.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
58 Network_953.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
59 Network_954.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
60 Network_955.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
61 Network_956.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
62 Network_957.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
63 Network_958.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
64 Network_959.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
65 Network_960.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
66 Network_961.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
67 Network_962.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
68 Network_963.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
69 Network_964.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
70 Network_965.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
71 Network_966.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
72 Network_967.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
73 Network_968.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
74 Network_969.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
75 Network_970.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
76 Network_971.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
77 Network_972.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
78 Network_973.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
79 Network_974.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
80 Network_975.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
81 Network_976.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
82 Network_977.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
83 Network_978.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
84 Network_979.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
85 Network_980.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
86 Network_981.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
87 Network_982.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
88 Network_983.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
89 Network_984.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
90 Network_985.graphml Duplicate attribute name found: 'status' (for <key id='d0'>). Parse error\nSource: io/graphml.c:800
Hello all,
Thank you for this repository!
I am writing with some issues that were flagged for particular networks when I read them into R using igraph::read_graph(). There are 90 networks that, in at least some cases, prevent them reading into R. I can manually go through these at some point, if I need them for my work. Yet, I thought it prudent to post here in case someone has already encountered these errors or if their correction would be beneficial in the long run.