Hello,
I have a question about the numberclust parameter. I am trying to use it filter out small singleton clusters, however it seems to be filtering out everything.
Here is one part of my visualization with numberclust set to the default value with no filtering. In the figure below, there is a cluster of 4 bins on the righthand side that look significantly different between conditions.
But when I set numberclust to 2, this group of bins and others like it are being filtered out and the resulting visualization shows no significant regions. I am not using the distclust parameter.
Am I misunderstanding how numberclust works? And if so, is there a way to easily remove these singleton bins without discarding larger clusters, as seems to be happening here?
Thank you!
Hello,
I have a question about the numberclust parameter. I am trying to use it filter out small singleton clusters, however it seems to be filtering out everything.
Here is one part of my visualization with numberclust set to the default value with no filtering. In the figure below, there is a cluster of 4 bins on the righthand side that look significantly different between conditions.
But when I set numberclust to 2, this group of bins and others like it are being filtered out and the resulting visualization shows no significant regions. I am not using the distclust parameter.
Am I misunderstanding how numberclust works? And if so, is there a way to easily remove these singleton bins without discarding larger clusters, as seems to be happening here?
Thank you!