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correct the lingam extra version to 0.3.2 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
document the lingam extra (logdag 0.4.0) lingam is no longer a core requirement: move it out of the prerequisites table into a new "LiNGAM methods" entry under optional extras, explaining that the extra cannot be installed on Python 3.13/3.14 (lingam pins scipy<=1.13.1 for its semopy dependency, and that scipy has no wheel there). Note the extra where the methods and the [lingam] config section are described. Extending-logdag's adapter example showed a bare `import lingam`; it now shows _import_lingam() and the guidance says to report the extra name when an optional library is missing. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
follow logdag 0.3.2: show-deafult-config renamed to show-default-config logdag 0.3.2 fixes the misspelled subcommand key, so update the `-h` transcripts, the CLI-Commands entry, and the Configuration examples to the correct name. The typo notes now say the opposite: 0.3.1 and earlier need the misspelled spelling. Bump the version references (grounding notes, package layout, verified-against lines) to 0.3.2. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
add wiki documentation pages; align dependency URLs to amulog org Populate the wiki: overview/pipeline, installation, quick-start (tutorial/ SSH sample), configuration, causal-discovery methods (built-ins pc/lingam/ pc-corr/lingam-corr plus the logdag.cause_algorithm out-of-tree plugin mechanism), CLI commands, architecture, data sources, and extending guide. Consistent with logdag 0.3.1. amulog/logdag URLs use the amulog org (amulog moved cpflat->amulog); pcalg stays cpflat (not moved). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>