Can't update citup

[ivan108]

Hello,
I installed citup following README instructions. But it installed and old version:

conda install citup
conda list citup
# packages in environment at /c4/home/jocostello/miniconda2:
#
# Name                    Version                   Build  Channel
citup                     0.1.0                    py27_1    dranew

Then I tried to update it to the latest version

conda update -c dranew citup
...
==> WARNING: A newer version of conda exists. <==
  current version: 4.8.4
  latest version: 4.10.0
Please update conda by running
    $ conda update -n base -c defaults conda
# All requested packages already installed.

The citup version didn't change. How to install/update citup to the latest version (0.1.2 ?)

The reason I am trying to update it is that the old version crushes while running

run_citup_iter.py --submit local input.tsv out.h5
...
pypeliner.scheduler.PipelineException: pipeline failed

I am hoping the latest version will work.

Thanks!

[yejin1016]

I hope my solution can help anyone with the same issue of:

pypeliner.scheduler.PipelineException: pipeline failed

I've installed Pytables, downgraded scikit-learn, updated conda and updated all the conda pacakges.

conda install -c anaconda pytables
pip install scikit-learn==0.17
conda update -n base -c defaults conda
conda update --all

It worked for me.