Using CaSpER with single bulk RNA-Seq sample

[hkarakurt8742]

Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?

Thank you in advance.

[anastasija-jakjimovska]

@hkarakurt8742 Hi, did you manage to do it with a single sample?

[hkarakurt8742]

@hkarakurt8742 Hi, did you manage to do it with a single sample?

I could not actually. I could not find any method to do it.