unbalanced matrix(hap2-hicpro/hic_results/matrix/sample1/iced/150000/sample1_150000_iced.matrix)! input should be a square matrix

[Jiangjiangzhang6]

hi
its error to show that
unbalanced matrix(hap2-hicpro/hic_results/matrix/sample1/iced/150000/sample1_150000_iced.matrix)! input should be a square matrix

this is the command
/public/home/software/opt/bio/software/Python/2.7.15/bin/python ~/software/HiCPlotter-master/HiCPlotter.py -f hap2-hicpro/hic_results/matrix/sample1/iced/150000/sample1_150000_iced.matrix -n hES -chr HiC_scaffold_1 -bed
hap2-hicpro/hic_results/matrix/sample1/raw/150000/sample1_150000_abs.bed -r 150000 -o iced_2 -fh 0

[297B1]

Hello! Is it answered? I'm having the same issue too!

[Elliott77]

Same issue here! Using hic-pro output.

[ivorloyde]

-tri default is 0, change to "1" to specify HiC-Pro file.