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one chromosome divided into two #1048

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@mehmetday

I have a contact map. 3 autosomes are clearly mapped as chr1 and chr2. but the x chromosome is divided into x1 and x2. I found repetitive elements and rDNA on the x2. How to merge this two x1 and x2 into on x chromosome.? what reasons could be behing this diviation into two separete x chromosomes?

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