In the sample dataset I have, anat only in the ses-1 and the other sessions have no anatomicals.
For the purpose of this quick app I think we have two options and ideally expose them to the user to choose with the first one being default. --missing-anat-session
no-anat: just do processing without anatomical (simplest, and default)
skip : skip processing session without error
use-other: take anatomical from another session if present. If not present in any session - error.
In the sample dataset I have,
anatonly in the ses-1 and the other sessions have no anatomicals.For the purpose of this quick app I think we have two options and ideally expose them to the user to choose with the first one being default.
--missing-anat-sessionno-anat: just do processing without anatomical (simplest, and default)skip: skip processing session without erroruse-other: take anatomical from another session if present. If not present in any session - error.