chore: rename app from SNOMED Lookup to Codeagogo

Author: dionmcm

.github/workflows/ci.yml

@@ -7,7 +7,7 @@ on:
     branches: [main]
 
 env:
-  SCHEME: "SNOMED Lookup"
+  SCHEME: "Codeagogo"
   DESTINATION: "platform=macOS"
 
 jobs:
@@ -42,7 +42,7 @@ jobs:
           xcodebuild test \
             -scheme "$SCHEME" \
             -destination "$DESTINATION" \
-            -only-testing:"SNOMED LookupTests" \
+            -only-testing:"CodeagogoTests" \
             -configuration Debug \
             CODE_SIGN_IDENTITY="-" \
             CODE_SIGNING_REQUIRED=NO \
@@ -55,7 +55,7 @@ jobs:
           xcodebuild test \
             -scheme "$SCHEME" \
             -destination "$DESTINATION" \
-            -only-testing:"SNOMED LookupUITests" \
+            -only-testing:"CodeagogoUITests" \
             -configuration Debug \
             CODE_SIGN_IDENTITY="-" \
             CODE_SIGNING_REQUIRED=YES \
@@ -122,15 +122,15 @@ jobs:
       - name: Create Artifact
         run: |
           mkdir -p artifact
-          cp -R "build/Build/Products/Release/SNOMED Lookup.app" artifact/
+          cp -R "build/Build/Products/Release/Codeagogo.app" artifact/
           cd artifact
-          zip -r "SNOMED-Lookup-macOS.zip" "SNOMED Lookup.app"
+          zip -r "Codeagogo-macOS.zip" "Codeagogo.app"
 
       - name: Upload Artifact
         uses: actions/upload-artifact@v4
         with:
-          name: SNOMED-Lookup-macOS
-          path: artifact/SNOMED-Lookup-macOS.zip
+          name: Codeagogo-macOS
+          path: artifact/Codeagogo-macOS.zip
           retention-days: 30
 
       - name: Cleanup Keychain

.github/workflows/release.yml

@@ -9,7 +9,7 @@ on:
         type: string
 
 env:
-  SCHEME: "SNOMED Lookup"
+  SCHEME: "Codeagogo"
   DESTINATION: "platform=macOS"
 
 jobs:
@@ -76,10 +76,10 @@ jobs:
           # Update MARKETING_VERSION in project.pbxproj for the main app target
           # This updates all occurrences which covers Debug and Release configurations
           sed -i '' "s/MARKETING_VERSION = [0-9]*\.[0-9]*\.[0-9]*;/MARKETING_VERSION = $VERSION;/g" \
-            "SNOMED Lookup.xcodeproj/project.pbxproj"
+            "Codeagogo.xcodeproj/project.pbxproj"
 
           echo "Updated Xcode project version to $VERSION"
-          grep "MARKETING_VERSION" "SNOMED Lookup.xcodeproj/project.pbxproj"
+          grep "MARKETING_VERSION" "Codeagogo.xcodeproj/project.pbxproj"
 
       - name: Extract release notes
         id: release_notes
@@ -97,7 +97,7 @@ jobs:
 
       - name: Commit release changes
         run: |
-          git add CHANGELOG.md "SNOMED Lookup.xcodeproj/project.pbxproj"
+          git add CHANGELOG.md "Codeagogo.xcodeproj/project.pbxproj"
           git commit -m "release: v${{ inputs.version }}"
 
       - name: Create and push tag
@@ -155,17 +155,17 @@ jobs:
       - name: Create artifact
         run: |
           mkdir -p artifact
-          cp -R "build/Build/Products/Release/SNOMED Lookup.app" artifact/
+          cp -R "build/Build/Products/Release/Codeagogo.app" artifact/
           cd artifact
-          zip -r "SNOMED-Lookup-v${{ inputs.version }}-macOS.zip" "SNOMED Lookup.app"
+          zip -r "Codeagogo-v${{ inputs.version }}-macOS.zip" "Codeagogo.app"
 
       - name: Create GitHub Release
         uses: softprops/action-gh-release@v2
         with:
           tag_name: v${{ inputs.version }}
-          name: SNOMED Lookup v${{ inputs.version }}
+          name: Codeagogo v${{ inputs.version }}
           body_path: release_notes.md
-          files: artifact/SNOMED-Lookup-v${{ inputs.version }}-macOS.zip
+          files: artifact/Codeagogo-v${{ inputs.version }}-macOS.zip
           draft: false
           prerelease: false
 

ARCHITECTURE.md

@@ -1,6 +1,6 @@
-# SNOMED Lookup Architecture
+# Codeagogo Architecture
 
-This document describes the technical architecture of SNOMED Lookup, a macOS menu bar application for looking up SNOMED CT concepts.
+This document describes the technical architecture of Codeagogo, a macOS menu bar application for looking up SNOMED CT concepts.
 
 ## Table of Contents
 
@@ -17,7 +17,7 @@ This document describes the technical architecture of SNOMED Lookup, a macOS men
 
 ## Overview
 
-SNOMED Lookup is a lightweight macOS utility that enables users to look up SNOMED CT (Systematized Nomenclature of Medicine - Clinical Terms) concepts from any application using a global hotkey.
+Codeagogo is a lightweight macOS utility that enables users to look up SNOMED CT (Systematized Nomenclature of Medicine - Clinical Terms) concepts from any application using a global hotkey.
 
 ### Key Characteristics
 
@@ -31,7 +31,7 @@ SNOMED Lookup is a lightweight macOS utility that enables users to look up SNOME
 
 ```mermaid
 flowchart TB
-    subgraph App["SNOMED Lookup Application"]
+    subgraph App["Codeagogo Application"]
         subgraph Presentation["Presentation Layer"]
             MenuBar["Menu Bar<br/>Status Item"]
             Popover["Popover View<br/>(SwiftUI)"]
@@ -71,7 +71,7 @@ flowchart TB
 
 ### Presentation Layer
 
-#### `SNOMED_LookupApp.swift`
+#### `CodeagogoApp.swift`
 - **Role**: Application entry point (`@main`)
 - **Responsibilities**:
   - Define the SwiftUI App structure

CHANGELOG.md

@@ -1,18 +1,27 @@
 # Changelog
 
-All notable changes to SNOMED Lookup are documented in this file.
+All notable changes to Codeagogo are documented in this file.
 
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/).
 
 ## [Unreleased]
 
 ### Added
+- **Inserted text remains selected**: After using the replace hotkey or ECL format hotkey, the inserted text is automatically selected, making it easy to undo or further edit. Selection skipped for text > 1000 characters to avoid delays
+- **Inactive concept highlighting**: The popover now prominently displays inactive concepts with an orange warning icon and "INACTIVE" label
+- **"INACTIVE - " prefix option**: New setting (default: on) prefixes inactive concept terms with "INACTIVE - " when using the replace hotkey (e.g., `146066001 | INACTIVE - Some term |`)
+- **Hotkey recorder UI**: Settings now uses a keystroke recorder control for configuring hotkeys. Click "Record" and press your desired key combination instead of selecting from dropdown menus and checkboxes.
+- **Multi-code-system support**: Lookup, replace, and search now work with LOINC, ICD-10, RxNorm, and other code systems in addition to SNOMED CT
+- **Code system picker in search panel**: Switch between SNOMED CT and configured code systems when searching
+- **Code system configuration in Settings**: Add, remove, and enable/disable code systems from the terminology server
+- **SCTID validation**: Uses Verhoeff check digit algorithm to distinguish valid SNOMED CT IDs from other numeric codes
 - **ECL Format hotkey** (Control+Option+E): Toggles selected ECL expressions between pretty-printed and minified formats
 - Full ECL 2.x parser supporting constraint operators, compound expressions, refinements, and filters
 - Settings UI for configuring ECL format hotkey key and modifiers
 - **Progress HUD** for replace hotkey: Shows lookup progress when processing many concepts
 
 ### Fixed
+- **Inactive concept status**: Fixed issue where inactive concepts were incorrectly displayed as active. The FHIR response parser now correctly handles the `inactive` property when returned as a boolean value.
 - **Replace hotkey reliability**: Fixed issue where some concept IDs weren't being replaced when processing large selections (50+ concepts)
 
 ### Performance
@@ -35,10 +44,44 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/).
     3. `385804009` → `385804009 | Diabetic care |` (add again)
   - Mixed selections work: `385804009 | Wrong | and 73211009` updates both
 
+### Changed
+- **Lookup hotkey** now automatically detects whether a code is SNOMED CT (via Verhoeff check) or from another code system
+- **Popover view** adapts display based on code system: shows FSN/PT/Edition for SNOMED CT, simpler Code/Display/System for others
+- **Replace hotkey** handles mixed selections with both SNOMED CT and non-SNOMED codes
+
 ### Technical
+- App now prompts for Accessibility permission on launch via `AXIsProcessTrustedWithOptions` for reliable text selection
+- Extended SystemSelectionReader with Accessibility API methods (`getSelectionRange`, `setSelectionRange`, `pasteAndSelect`) to select inserted text after paste operations
+- Selection fallback uses character-by-character keyboard simulation (Shift+Left Arrow) for precise selection up to 1000 chars
+- Added HotKeyRecorderView.swift for recording keyboard shortcuts via keystroke capture
+- Added KeyCodeFormatter.swift for formatting key codes with macOS modifier symbols (⌃⌥⇧⌘)
+- Refactored hotkey settings to use KeyCodeFormatter for human-readable hotkey display
+- Simplified SettingsView by removing Picker/Toggle-based hotkey configuration
+- Added KeyCodeFormatterTests.swift with comprehensive tests for key formatting
+- Added SCTIDValidator.swift with Verhoeff check digit algorithm for SNOMED CT ID validation
+- Added CodeSystemSettings.swift for managing configured code systems (persisted to UserDefaults)
+- Added AvailableCodeSystem struct for code systems discovered from the server
+- Extended ConceptResult with `system` field and `systemName`/`isSNOMEDCT` computed properties
+- Added `getAvailableCodeSystems()` method to OntoserverClient for fetching non-SNOMED code systems
+- Added `lookupInCodeSystem()` method for looking up codes in specific code systems
+- Added `lookupInConfiguredSystems()` method for parallel search across configured systems
+- Added `searchInCodeSystem()` method for searching within non-SNOMED code systems
+- Extended LookupViewModel with `ExtractedCode` struct and `extractCode()` method for SCTID validation
+- Updated `extractAllConceptIds()` to include `isSCTID` flag in ConceptMatch
+- Extended ConceptLookupClient protocol with `lookupInConfiguredSystems()` method
+- Updated SearchSettings with `selectedCodeSystemURI` for code system selection
+- Updated SearchViewModel to handle non-SNOMED code system searches
+- Updated SearchPanelView with code system picker (edition picker hidden for non-SNOMED)
+- Updated SettingsView with "Additional Code Systems" configuration section
+- Updated PopoverView to show adapted UI for SNOMED CT vs non-SNOMED results
+- Added SCTIDValidatorTests.swift with 20+ tests for Verhoeff validation
+- Added CodeSystemSettingsTests.swift for settings and ConceptResult code system tests
+- Extended OntoserverClientTests.swift with multi-code-system response parsing tests
+- Extended ConceptIdExtractionTests.swift with SCTID validation and ExtractedCode tests
 - Added ProgressHUD.swift for displaying lookup progress near cursor
 - Added `batchLookup(conceptIds:)` method to OntoserverClient using `ValueSet/$expand` for efficient multi-concept lookup
-- Added `BatchLookupResult` struct to hold PT and FSN mappings from batch lookups
+- `BatchLookupResult` includes active status via `property=inactive` parameter (parsed from FHIR R5 property extension)
+- Added `BatchLookupResult` struct to hold PT, FSN, and active status mappings from batch lookups
 - Added ECLToken.swift with token type definitions for ECL syntax elements
 - Added ECLLexer.swift for tokenizing ECL expressions (handles operators, identifiers, literals)
 - Added ECLAST.swift with AST node types (expressions, refinements, attributes, filters)
@@ -91,7 +134,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/).
 - Unknown edition IDs now fall back to CodeSystem title from server instead of showing raw ID
 
 ### Testing
-- Added UI test automation target (`SNOMED LookupUITests`) with XCUITest coverage
+- Added UI test automation target (`CodeagogoUITests`) with XCUITest coverage
 - Settings window UI tests (~20 tests): hotkey pickers, modifier toggles, format picker, FHIR URL, save button, logging, diagnostics
 - Search panel UI tests (~8 tests): panel open/close, search field, cancel, insert disabled state, edition picker
 - Menu bar UI tests (~3 tests): app launch, status item, menu items
@@ -175,7 +218,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/).
 - Support for multiple Xcode workspaces
 
 ### Changed
-- Switched from SNOMED Lookup Service to CSIRO Ontoserver for improved reliability
+- Switched from Codeagogo Service to CSIRO Ontoserver for improved reliability
 - Improved logging with categorical loggers (network, selection, ui, general)
 
 ### Fixed

CLAUDE.md

@@ -10,7 +10,7 @@ When making changes to this codebase, follow these rules:
 
 1. **Update CHANGELOG.md** — Add entries under `[Unreleased]` for any user-facing changes
 2. **Add or update tests** — New functionality needs tests; bug fixes need regression tests
-3. **Run tests before committing** — Ensure all 63+ tests pass: `xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS"`
+3. **Run tests before committing** — Ensure all 63+ tests pass: `xcodebuild test -scheme "Codeagogo" -destination "platform=macOS"`
 4. **Add docstrings** — Document all new public types, methods, and non-trivial private methods
 5. **Update documentation** — Keep README.md, ARCHITECTURE.md, and other docs in sync with code changes
 6. **Follow existing patterns** — Match the code style and architecture of surrounding code
@@ -72,7 +72,7 @@ Before submitting changes:
 
 ## Project Overview
 
-SNOMED Lookup is a macOS menu bar application that looks up SNOMED CT concepts from any application using a global hotkey. Users select a concept ID, press the hotkey, and see concept details in a popover near the cursor.
+Codeagogo is a macOS menu bar application that looks up SNOMED CT concepts from any application using a global hotkey. Users select a concept ID, press the hotkey, and see concept details in a popover near the cursor.
 
 ## Tech Stack
 
@@ -101,14 +101,14 @@ SNOMED Lookup is a macOS menu bar application that looks up SNOMED CT concepts f
 
 ```bash
 # Build
-xcodebuild build -scheme "SNOMED Lookup" -destination "platform=macOS"
+xcodebuild build -scheme "Codeagogo" -destination "platform=macOS"
 
 # Run tests
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS"
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS"
 
 # Run specific test class
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS" \
-  -only-testing:"SNOMED LookupTests/ConceptCacheTests"
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS" \
+  -only-testing:"CodeagogoTests/ConceptCacheTests"
 
 # Package for distribution
 ./package-zip.sh
@@ -221,7 +221,7 @@ private let maxSize = 100
 
 2. **Single Instance** — `enforceSingleInstance()` terminates if another instance is running. This can interfere with debugging if a release build is running.
 
-3. **Test Environment** — Tests may fail with "Early unexpected exit" if another instance is running. Kill existing instances first: `pkill -9 "SNOMED Lookup"`
+3. **Test Environment** — Tests may fail with "Early unexpected exit" if another instance is running. Kill existing instances first: `pkill -9 "Codeagogo"`
 
 4. **Carbon Modifiers** — NSEvent and Carbon use different modifier flag formats. Always use `HotKeySettings.carbonModifiers(from:)`.
 

CONTRIBUTING.md

@@ -1,6 +1,6 @@
-# Contributing to SNOMED Lookup
+# Contributing to Codeagogo
 
-Thank you for your interest in contributing to SNOMED Lookup! This document provides guidelines and information for contributors.
+Thank you for your interest in contributing to Codeagogo! This document provides guidelines and information for contributors.
 
 ## Table of Contents
 
@@ -40,20 +40,20 @@ Before contributing, familiarize yourself with:
 
 ```bash
 # Fork the repository on GitHub, then clone your fork
-git clone https://github.com/YOUR_USERNAME/snomed-lookup.git
-cd "snomed-lookup/SNOMED Lookup"
+git clone https://github.com/YOUR_USERNAME/codeagogo.git
+cd "codeagogo/Codeagogo"
 ```
 
 ### 2. Open in Xcode
 
 ```bash
-open "SNOMED Lookup.xcodeproj"
+open "Codeagogo.xcodeproj"
 ```
 
 ### 3. Configure Signing
 
 - Open the project settings
-- Select the "SNOMED Lookup" target
+- Select the "Codeagogo" target
 - Under "Signing & Capabilities", select your development team
 
 ### 4. Grant Permissions
@@ -66,10 +66,10 @@ When running the app:
 
 ```bash
 # Build the project
-xcodebuild build -scheme "SNOMED Lookup" -destination "platform=macOS"
+xcodebuild build -scheme "Codeagogo" -destination "platform=macOS"
 
 # Run all tests
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS"
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS"
 ```
 
 ## Making Changes
@@ -201,14 +201,14 @@ enum MyError: LocalizedError {
 
 ```bash
 # Run all tests
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS"
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS"
 
 # Run specific test class
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS" \
-  -only-testing:"SNOMED LookupTests/ConceptCacheTests"
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS" \
+  -only-testing:"CodeagogoTests/ConceptCacheTests"
 
 # Run with verbose output
-xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS" \
+xcodebuild test -scheme "Codeagogo" -destination "platform=macOS" \
   2>&1 | grep -E "(Test Case|passed|failed)"
 ```
 
@@ -254,12 +254,12 @@ Aim for meaningful coverage of:
 
 1. **Ensure all tests pass**
    ```bash
-   xcodebuild test -scheme "SNOMED Lookup" -destination "platform=macOS"
+   xcodebuild test -scheme "Codeagogo" -destination "platform=macOS"
    ```
 
 2. **Verify no compiler warnings**
    ```bash
-   xcodebuild build -scheme "SNOMED Lookup" -destination "platform=macOS" 2>&1 | grep warning
+   xcodebuild build -scheme "Codeagogo" -destination "platform=macOS" 2>&1 | grep warning
    ```
 
 3. **Update documentation** if needed
@@ -322,4 +322,4 @@ If you have questions about contributing, feel free to:
 - Review existing issues and pull requests
 - Check the documentation
 
-Thank you for contributing to SNOMED Lookup!
+Thank you for contributing to Codeagogo!