Skip to content

Commit 21769a5

Browse files
committed
re-rendered the website, and adjusted the materials page to link to the git repository for EEID
1 parent c565e77 commit 21769a5

13 files changed

Lines changed: 79 additions & 99 deletions

docs/VB_intro_to_traits.html

Lines changed: 58 additions & 43 deletions
Original file line numberDiff line numberDiff line change
@@ -227,6 +227,12 @@ <h2>Variability in Traits</h2>
227227
<img data-src="graphics/intro_traits_13.jpg">
228228
</center>
229229
</section>
230+
<section id="sir-model" class="slide level2">
231+
<h2>SIR Model</h2>
232+
<center>
233+
<img data-src="graphics/SIR_1.jpg">
234+
</center>
235+
</section>
230236
<section class="slide level2">
231237

232238
<p>We can get more complex/realistic models…</p>
@@ -242,49 +248,58 @@ <h2>Variability in Traits</h2>
242248
<img data-src="graphics/SIR_3.jpg">
243249
</center>
244250
<p>H=host, V=vector, <span class="math inline">\(_S\)</span>=susceptible, <span class="math inline">\(_I\)</span>=infected, <span class="math inline">\(_R\)</span>=recovered a=biting rate, b=vector to host transmission success (proportion of bites), d=recovery</p>
245-
</section>
246-
<section class="slide level2">
247-
248-
<center>
249-
<img data-src="graphics/SIR_4.jpg">
250-
</center>
251-
<p>H=host, V=vector, <span class="math inline">\(_S\)</span>=susceptible, <span class="math inline">\(_I\)</span>=infected, <span class="math inline">\(_R\)</span>=recovered a=biting rate, b=vector to host transmission success (proportion of bites), d=recovery, c=host to vector transmission success (proportion of bites), P=extrinsic incubation period, <span class="math inline">\(\mu\)</span>=adult vector mortality rate</p>
252-
</section>
253-
<section id="r_0-directly-transmitted-pathogen" class="slide level2">
254-
<h2><span class="math inline">\(R_0\)</span>: Directly-Transmitted Pathogen</h2>
255-
<center>
256-
<img data-src="graphics/intro_traits_10.jpg">
257-
</center>
258-
</section>
259-
<section id="r_0-vector-borne-pathogen" class="slide level2">
260-
<h2><span class="math inline">\(R_0\)</span>: Vector-Borne Pathogen</h2>
261-
<center>
262-
<img data-src="graphics/intro_traits_12.jpg">
263-
</center>
264-
</section>
265-
<section id="thermal-performance-curves-tpcs" class="slide level2">
266-
<h2>Thermal Performance Curves (TPCs)</h2>
267-
<div class="columns">
268-
<div class="column" style="width:40%;">
269-
<p><br></p>
270-
<ul>
271-
<li><p>Vectors of interest are typically ectothermic</p></li>
272-
<li><p>Biological reactions typically go faster as temperature increases</p></li>
273-
</ul>
274-
</div><div class="column" style="width:60%;">
275-
<center>
276-
<img data-src="graphics/TPC_2.jpg">
277-
</center>
278-
</div></div>
279-
</section>
280-
<section id="but-theres-a-limit" class="slide level2">
281-
<h2>But there’s a limit!</h2>
282-
<center>
283-
<img data-src="graphics/TPC_3.jpg" style="width:80.0%">
284-
</center>
285-
</section>
286-
<section class="slide level2">
287-
251+
<table class="caption-top">
252+
<colgroup>
253+
<col style="width: 100%">
254+
</colgroup>
255+
<tbody>
256+
<tr class="odd">
257+
<td style="text-align: left;"></td>
258+
</tr>
259+
<tr class="even">
260+
<td style="text-align: left;">## <span class="math inline">\(R_0\)</span>: Directly-Transmitted Pathogen</td>
261+
</tr>
262+
<tr class="odd">
263+
<td style="text-align: left;"></td>
264+
</tr>
265+
<tr class="even">
266+
<td style="text-align: left;">## <span class="math inline">\(R_0\)</span>: Vector-Borne Pathogen</td>
267+
</tr>
268+
<tr class="odd">
269+
<td style="text-align: left;"></td>
270+
</tr>
271+
<tr class="even">
272+
<td style="text-align: left;">## Thermal Performance Curves (TPCs)</td>
273+
</tr>
274+
<tr class="odd">
275+
<td style="text-align: left;">::: columns ::: {.column width=“40%”}</td>
276+
</tr>
277+
<tr class="even">
278+
<td style="text-align: left;"><br></td>
279+
</tr>
280+
<tr class="odd">
281+
<td style="text-align: left;">- Vectors of interest are typically ectothermic</td>
282+
</tr>
283+
<tr class="even">
284+
<td style="text-align: left;">- Biological reactions typically go faster as temperature increases</td>
285+
</tr>
286+
<tr class="odd">
287+
<td style="text-align: left;">::: ::: {.column width=“60%”}</td>
288+
</tr>
289+
<tr class="even">
290+
<td style="text-align: left;"></td>
291+
</tr>
292+
<tr class="odd">
293+
<td style="text-align: left;">:::</td>
294+
</tr>
295+
<tr class="even">
296+
<td style="text-align: left;">## But there’s a limit!</td>
297+
</tr>
298+
<tr class="odd">
299+
<td style="text-align: left;"></td>
300+
</tr>
301+
</tbody>
302+
</table>
288303
<div class="columns">
289304
<div class="column" style="width:50%;">
290305
<ul>

docs/graphics/SIR_4.jpg

-36.6 KB
Binary file not shown.

docs/graphics/TPC_3.jpg

-44 KB
Binary file not shown.

docs/graphics/intro_traits_10.jpg

-125 KB
Binary file not shown.

docs/graphics/intro_traits_12.jpg

-224 KB
Binary file not shown.

docs/materials.html

Lines changed: 4 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -141,8 +141,7 @@ <h2 id="toc-title">On This Page</h2>
141141
<li><a href="#live-workshop-materials" id="toc-live-workshop-materials" class="nav-link" data-scroll-target="#live-workshop-materials">Live Workshop Materials</a>
142142
<ul class="collapse">
143143
<li><a href="#introduction-to-the-workshops" id="toc-introduction-to-the-workshops" class="nav-link" data-scroll-target="#introduction-to-the-workshops">Introduction to the Workshops</a></li>
144-
<li><a href="#introduction-to-git" id="toc-introduction-to-git" class="nav-link" data-scroll-target="#introduction-to-git">Introduction to Git</a></li>
145-
<li><a href="#introduction-to-data-types-and-manipulation-with-r" id="toc-introduction-to-data-types-and-manipulation-with-r" class="nav-link" data-scroll-target="#introduction-to-data-types-and-manipulation-with-r">Introduction to Data Types and Manipulation with R</a></li>
144+
<li><a href="#introduction-to-git-and-introduction-to-data-types-and-manipulation-with-r" id="toc-introduction-to-git-and-introduction-to-data-types-and-manipulation-with-r" class="nav-link" data-scroll-target="#introduction-to-git-and-introduction-to-data-types-and-manipulation-with-r">Introduction to Git and Introduction to Data Types and Manipulation with R</a></li>
146145
<li><a href="#introduction-to-traits" id="toc-introduction-to-traits" class="nav-link" data-scroll-target="#introduction-to-traits">Introduction to Traits</a></li>
147146
<li><a href="#intro-to-the-vectraits-database" id="toc-intro-to-the-vectraits-database" class="nav-link" data-scroll-target="#intro-to-the-vectraits-database">Intro to the VecTraits Database</a></li>
148147
<li><a href="#the-vectraits-ai-assisted-digitization-pipeline" id="toc-the-vectraits-ai-assisted-digitization-pipeline" class="nav-link" data-scroll-target="#the-vectraits-ai-assisted-digitization-pipeline">The VecTraits AI assisted digitization pipeline</a></li>
@@ -221,17 +220,10 @@ <h3 class="anchored" data-anchor-id="introduction-to-the-workshops">Introduction
221220
</ul>
222221
<p><br></p>
223222
</section>
224-
<section id="introduction-to-git" class="level3">
225-
<h3 class="anchored" data-anchor-id="introduction-to-git">Introduction to Git</h3>
223+
<section id="introduction-to-git-and-introduction-to-data-types-and-manipulation-with-r" class="level3">
224+
<h3 class="anchored" data-anchor-id="introduction-to-git-and-introduction-to-data-types-and-manipulation-with-r">Introduction to Git and Introduction to Data Types and Manipulation with R</h3>
226225
<ul>
227-
<li><a href="https://eeidworkshop2026.github.io/home/materials.html#introduction-to-github-through-r">Coming Soon! – with EEID</a></li>
228-
</ul>
229-
<p><br></p>
230-
</section>
231-
<section id="introduction-to-data-types-and-manipulation-with-r" class="level3">
232-
<h3 class="anchored" data-anchor-id="introduction-to-data-types-and-manipulation-with-r">Introduction to Data Types and Manipulation with R</h3>
233-
<ul>
234-
<li><a href="https://eeidworkshop2026.github.io/home/materials.html">Coming Soon! – with EEID</a></li>
226+
<li><a href="https://github.com/EEIDWorkshop2026/materials">Git Repository</a></li>
235227
</ul>
236228
<p><br></p>
237229
</section>

docs/search.json

Lines changed: 7 additions & 28 deletions
Large diffs are not rendered by default.

docs/vectorByte2026_NLLS.html

Lines changed: 8 additions & 8 deletions
Large diffs are not rendered by default.
724 Bytes
Loading
613 Bytes
Loading

0 commit comments

Comments
 (0)