First of all, great pipeline guys! Easy to use, and well written code!
(I would not call this an issue, just letting you know): I ran the pipeline with the following command:
perl RNAseqAnalyse.pl -input ./raw_files/ -outputDir ./output_files/
and it failed.
Looking at the log file, I noticed that the path to output directory is formed by adding my home directory to the provided paths. In other words, the pipeline was trying to write its output in:
<home directory> + './output_files/'
and thats why the pipeline could not run.
Thanks!
First of all, great pipeline guys! Easy to use, and well written code!
(I would not call this an issue, just letting you know): I ran the pipeline with the following command:
perl RNAseqAnalyse.pl -input ./raw_files/ -outputDir ./output_files/and it failed.
Looking at the log file, I noticed that the path to output directory is formed by adding my home directory to the provided paths. In other words, the pipeline was trying to write its output in:
<home directory> + './output_files/'and thats why the pipeline could not run.
Thanks!