By running this command -
python3 ./cell_segmentation/inference/cell_detection.py process_dataset --model ./models/pretrained/CellViT/CellViT-256-x40.pth --wsi_path /media/storage1/Prabhakaran_Images
/Prabhakaran/Prabhakaran_Images/R100.svs --patched_slide_path /media/storage1/Prabhakaran_Images/Prabhakaran/output/R
100/patches
Getting below error -
INFO: Pandarallel will run on 12 workers.
INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
usage: cell_detection.py [-h] --model MODEL [--gpu GPU] [--magnification MAGNIFICATION] [--enforce_amp]
[--batch_size BATCH_SIZE] [--outdir_subdir OUTDIR_SUBDIR] [--geojson]
{process_wsi,process_dataset} ...
cell_detection.py: error: the following arguments are required: --model
By running this command -
python3 ./cell_segmentation/inference/cell_detection.py process_dataset --model ./models/pretrained/CellViT/CellViT-256-x40.pth --wsi_path /media/storage1/Prabhakaran_Images
/Prabhakaran/Prabhakaran_Images/R100.svs --patched_slide_path /media/storage1/Prabhakaran_Images/Prabhakaran/output/R
100/patches
Getting below error -
INFO: Pandarallel will run on 12 workers.
INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
usage: cell_detection.py [-h] --model MODEL [--gpu GPU] [--magnification MAGNIFICATION] [--enforce_amp]
[--batch_size BATCH_SIZE] [--outdir_subdir OUTDIR_SUBDIR] [--geojson]
{process_wsi,process_dataset} ...
cell_detection.py: error: the following arguments are required: --model