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package com.shimmerresearch.driver;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.io.Serializable;
import java.nio.ByteBuffer;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.HashMap;
import java.util.Iterator;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import java.util.TreeMap;
import javax.vecmath.Quat4d;
import javax.vecmath.Vector3d;
import org.apache.commons.math.stat.descriptive.DescriptiveStatistics;
import com.google.common.collect.BiMap;
import com.google.common.collect.ImmutableBiMap;
import com.shimmerresearch.algorithms.AbstractAlgorithm;
import com.shimmerresearch.algorithms.gyroOnTheFlyCal.GyroOnTheFlyCalModule;
import com.shimmerresearch.algorithms.gyroOnTheFlyCal.OnTheFlyGyroOffsetCal;
import com.shimmerresearch.comms.wiredProtocol.UartComponentPropertyDetails;
import com.shimmerresearch.comms.wiredProtocol.UartPacketDetails.UART_COMPONENT_AND_PROPERTY;
import com.shimmerresearch.driver.Configuration.CHANNEL_UNITS;
import com.shimmerresearch.driver.Configuration.COMMUNICATION_TYPE;
import com.shimmerresearch.driver.Configuration.Shimmer2;
import com.shimmerresearch.driver.Configuration.Shimmer3;
import com.shimmerresearch.driver.Configuration.Shimmer3.DerivedSensorsBitMask;
import com.shimmerresearch.driver.calibration.CalibDetails;
import com.shimmerresearch.driver.calibration.CalibDetailsKinematic;
import com.shimmerresearch.driver.calibration.UtilCalibration;
import com.shimmerresearch.driver.calibration.CalibDetails.CALIB_READ_SOURCE;
import com.shimmerresearch.driver.shimmer2r3.BluetoothModuleVersionDetails;
import com.shimmerresearch.driver.shimmer2r3.ConfigByteLayoutShimmer3;
import com.shimmerresearch.driver.shimmerGq.ConfigByteLayoutShimmerGq802154;
import com.shimmerresearch.driverUtilities.ChannelDetails;
import com.shimmerresearch.driverUtilities.ConfigOptionDetails;
import com.shimmerresearch.driverUtilities.ConfigOptionDetailsSensor;
import com.shimmerresearch.driverUtilities.ExpansionBoardDetails;
import com.shimmerresearch.driverUtilities.SensorDetailsRef;
import com.shimmerresearch.driverUtilities.SensorGroupingDetails;
import com.shimmerresearch.driverUtilities.SensorDetails;
import com.shimmerresearch.driverUtilities.ShimmerSDCardDetails;
import com.shimmerresearch.driverUtilities.ShimmerVerDetails;
import com.shimmerresearch.driverUtilities.ShimmerVerObject;
import com.shimmerresearch.driverUtilities.UtilParseData;
import com.shimmerresearch.driverUtilities.UtilShimmer;
import com.shimmerresearch.exceptions.ShimmerException;
import com.shimmerresearch.driverUtilities.ChannelDetails.CHANNEL_TYPE;
import com.shimmerresearch.driverUtilities.ShimmerVerDetails.FW_ID;
import com.shimmerresearch.driverUtilities.ShimmerVerDetails.HW_ID;
import com.shimmerresearch.driverUtilities.ShimmerVerDetails.HW_ID_SR_CODES;
import com.shimmerresearch.exgConfig.ExGConfigBytesDetails;
import com.shimmerresearch.exgConfig.ExGConfigBytesDetails.EXG_SETTINGS;
import com.shimmerresearch.exgConfig.ExGConfigOption;
import com.shimmerresearch.exgConfig.ExGConfigBytesDetails.EXG_SETTING_OPTIONS;
import com.shimmerresearch.exgConfig.ExGConfigOptionDetails.EXG_CHIP_INDEX;
import com.shimmerresearch.sensors.AbstractSensor;
import com.shimmerresearch.sensors.SensorADC;
import com.shimmerresearch.sensors.SensorBridgeAmp;
import com.shimmerresearch.sensors.SensorECGToHRFw;
import com.shimmerresearch.sensors.SensorEXG;
import com.shimmerresearch.sensors.SensorGSR;
import com.shimmerresearch.sensors.SensorPPG;
import com.shimmerresearch.sensors.SensorShimmerClock;
import com.shimmerresearch.sensors.adxl371.SensorADXL371;
import com.shimmerresearch.sensors.AbstractSensor.SENSORS;
import com.shimmerresearch.sensors.SensorADC.MICROCONTROLLER_ADC_PROPERTIES;
import com.shimmerresearch.sensors.bmpX80.SensorBMP180;
import com.shimmerresearch.sensors.bmpX80.SensorBMP280;
import com.shimmerresearch.sensors.bmpX80.SensorBMP390;
import com.shimmerresearch.sensors.bmpX80.SensorBMPX80;
import com.shimmerresearch.sensors.kionix.SensorKionixAccel;
import com.shimmerresearch.sensors.kionix.SensorKionixKXRB52042;
import com.shimmerresearch.sensors.kionix.SensorKionixKXTC92050;
import com.shimmerresearch.sensors.lisxmdl.SensorLIS3MDL;
import com.shimmerresearch.sensors.lisxmdl.SensorLIS2MDL;
import com.shimmerresearch.sensors.lsm6dsv.SensorLSM6DSV;
import com.shimmerresearch.sensors.lis2dw12.SensorLIS2DW12;
import com.shimmerresearch.sensors.lsm303.SensorLSM303;
import com.shimmerresearch.sensors.lsm303.SensorLSM303AH;
import com.shimmerresearch.sensors.lsm303.SensorLSM303DLHC;
import com.shimmerresearch.sensors.mpu9x50.SensorMPU9150;
import com.shimmerresearch.sensors.mpu9x50.SensorMPU9250;
import com.shimmerresearch.sensors.mpu9x50.SensorMPU9X50;
import com.shimmerresearch.sensors.shimmer2.SensorMMA736x;
import com.shimmerresearch.sensors.shimmer2.SensorShimmer2Gyro;
import com.shimmerresearch.sensors.shimmer2.SensorShimmer2Mag;
import com.shimmerresearch.algorithms.orientation.GradDes3DOrientation;
import com.shimmerresearch.algorithms.orientation.GradDes3DOrientation9DoF;
import com.shimmerresearch.algorithms.orientation.Orientation3DObject;
/**
* Rev_1.9
* Copyright (c) 2010 - 2014, Shimmer Research, Ltd.
* All rights reserved
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
* * Neither the name of Shimmer Research, Ltd. nor the names of its
* contributors may be used to endorse or promote products derived
* from this software without specific prior written permission.
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. <br>
*
* @author Jong Chern Lim, Ruaidhri Molloy, Alejandro Saez, Mark Nolan <br>
*
* Changes since 1.8 <br>
* - updated to work with SDLOG
* - change method formatdatapacketreverse to protected
* - added i32r to parsed data
* - mSignalNameArray changed to protected
* - fix twos complement for long numbers (32bit>=)
* - fix 6dof calculation ~ long
* - fix intiali time stamp ~ long
*
*
* <br>Changes since 1.7 <br>
* - remove multiplying factor (2.8) from the gain in the calculation of the Bridge Amplifier calibrated data
*
* @date September, 2014 <br>
*
* Changes since 1.6 <br>
* - Added functionality for plotmanager see MSSAPI , addExtraSignalProperty, removeExtraSignalProperty ,getListofEnabledSensorSignalsandFormats()
* - various exg advance updates
*
* @date July, 2014 <br>
*
* <br>Changes since 1.5 <br>
* - Bridge Amplifier gauge support for Shimmer3
* - Bug fix for strain gauge calibration for Shimmer2r
* - Enable 3D orientation for wide range accel, orientation algorithm defaults to low noise even if wide range is enabled
* - Fixed quaternion naming typo
* - Commented out initialisation mSensorBitmaptoName
* - add method getPressureRawCoefficients
*
* @date October, 2013 <br>
*
* <br>Changes since 1.4 <br>
* - fix getListofEnabledSensors, which was not returning accel shimmer2r
* - fix null pointer graddes algo when using Shimmer2
* - converted to abstract class , and added checkbattery abstract method for the Shimmer2r
* - updated gsr calibrate command parameters for Shimmer3
* - removed mShimmerSamplingRate decimal formatter, decimal formatter should be done on the UI
* - fixed a GSR Shimmer2 problem when using autorange
* - added VSense Batt and VSense Reg and Timestamp to getListOfEnabledSensorSignals
* - added getSamplingRate()
* - added get methods for calibration parameters accel,gyro,mag,accel2
* - updated getoffsetaccel
* - added exg configurations
* - added i24r for exg
* - add get exg configurations
* - renamed i16* to i16r for consistency
* - added EXG_CHIP1 = 0 and EXG_CHIP2=1
* - updated Mag Default Range
*
* <br>v0.1.0 consensys
*/
public abstract class ShimmerObject extends ShimmerDevice implements Serializable {
/** * */
private static final long serialVersionUID = -1364568867018921219L;
public static final class DatabaseConfigHandleShimmerObject{
public static final String SYNC_WHEN_LOGGING = "Sync_When_Logging";
public static final String TRIAL_DURATION_ESTIMATED = "Trial_Dur_Est";
public static final String TRIAL_DURATION_MAXIMUM = "Trial_Dur_Max";
}
//Sensor Bitmap for ID ; for the purpose of forward compatibility the sensor bitmap and the ID and the sensor bitmap for the Shimmer firmware has been kept separate,
public static final int SENSOR_ACCEL = 0x80;
public static final int SENSOR_DACCEL = 0x1000;
public static final int SENSOR_GYRO = 0x40;
public static final int SENSOR_MAG = 0x20;
public static final int SENSOR_ECG = 0x10;
public static final int SENSOR_EMG = 0x08;
public static final int SENSOR_EXG1_24BIT = 0x10; //only applicable for Shimmer3
public static final int SENSOR_EXG2_24BIT = 0x08; //only applicable for Shimmer3
public static final int SHIMMER3_SENSOR_ECG = SENSOR_EXG1_24BIT + SENSOR_EXG2_24BIT;
public static final int SHIMMER3_SENSOR_EMG = SENSOR_EXG1_24BIT;
public static final int SENSOR_GSR = 0x04;
public static final int SENSOR_EXP_BOARD_A7 = 0x02; //only Applicable for Shimmer2
public static final int SENSOR_EXP_BOARD_A0 = 0x01; //only Applicable for Shimmer2
public static final int SENSOR_EXP_BOARD = SENSOR_EXP_BOARD_A7+SENSOR_EXP_BOARD_A0;
public static final int SENSOR_BRIDGE_AMP = 0x8000;
public static final int SENSOR_HEART = 0x4000;
public static final int SENSOR_BATT = 0x2000; //THIS IS A DUMMY VALUE
public static final int SENSOR_EXT_ADC_A7 = 0x02; //only Applicable for Shimmer3
public static final int SENSOR_EXT_ADC_A6 = 0x01; //only Applicable for Shimmer3
public static final int SENSOR_EXT_ADC_A15 = 0x0800;
public static final int SENSOR_INT_ADC_A1 = 0x0400;
public static final int SENSOR_INT_ADC_A12 = 0x0200;
public static final int SENSOR_INT_ADC_A13 = 0x0100;
public static final int SENSOR_INT_ADC_A14 = 0x800000;
public static final int SENSOR_ALL_ADC_SHIMMER3 = SENSOR_INT_ADC_A14 | SENSOR_INT_ADC_A13 | SENSOR_INT_ADC_A12 | SENSOR_INT_ADC_A1 | SENSOR_EXT_ADC_A7 | SENSOR_EXT_ADC_A6 | SENSOR_EXT_ADC_A15;
public static final int SENSOR_BMPX80 = 0x40000;
public static final int SENSOR_EXG1_16BIT = 0x100000; //only applicable for Shimmer3
public static final int SENSOR_EXG2_16BIT = 0x080000; //only applicable for Shimmer3
public static final int SENSOR_ALT_ACCEL = 0x400000; //only applicable for Shimmer3r
public static final int SENSOR_ALT_MAG = 0X200000; //only applicable for Shimmer3r
public BiMap<String, String> mSensorBitmaptoName;
public class SDLogHeader {
public final static int ACCEL_LN = 1<<7;
public final static int GYRO = 1<<6;
public final static int MAG = 1<<5;
public final static int EXG1_24BIT = 1<<4;
public final static int EXG2_24BIT = 1<<3;
public final static int GSR = 1<<2;
public final static int EXT_EXP_A7 = 1<<1;
public final static int EXT_EXP_A6 = 1<<0;
public final static int BRIDGE_AMP = 1<<15;
public final static int ECG_TO_HR_FW = 1<<14;
public final static int BATTERY = 1<<13;
public final static int ACCEL_WR = 1<<12;
public final static int EXT_EXP_A15 = 1<<11;
public final static int INT_EXP_A1 = 1<<10;
public final static int INT_EXP_A12 = 1<<9;
public final static int INT_EXP_A13 = 1<<8;
public final static int INT_EXP_A14 = 1<<23;
public final static int ACCEL_MPU = 1<<22;
public final static int MAG_MPU = 1<<21;
public final static int EXG1_16BIT = 1<<20;
public final static int EXG2_16BIT = 1<<19;
public final static int BMPX80 = 1<<18;
public final static int MPL_TEMPERATURE = 1<<17;
// 1<<16
public final static long MPL_QUAT_6DOF = (long)1<<31; // needs to be cast to a long otherwise would overflow
public final static int MPL_QUAT_9DOF = 1<<30;
public final static int MPL_EULER_6DOF = 1<<29;
public final static int MPL_EULER_9DOF = 1<<28;
public final static int MPL_HEADING = 1<<27;
public final static int MPL_PEDOMETER = 1<<26;
public final static int MPL_TAP = 1<<25;
public final static int MPL_MOTION_ORIENT = 1<<24;
public final static long GYRO_MPU_MPL = (long)1<<39;
public final static long ACCEL_MPU_MPL = (long)1<<38;
public final static long MAG_MPU_MPL = (long)1<<37;
public final static long SD_SENSOR_MPL_QUAT_6DOF_RAW = (long)1<<36;
// 1<<35
// 1<<34
// 1<<33
// 1<<32
}
public class BTStream {
public final static int ACCEL_LN = 0x80;
public final static int GYRO = 0x40;
public final static int MAG = 0x20;
public final static int EXG1_24BIT = 0x10;
public final static int EXG2_24BIT = 0x08;
public final static int GSR = 0x04;
public final static int EXT_EXP_A7 = 0x02;
public final static int EXT_EXP_A6 = 0x01;
public final static int BRIDGE_AMP = 0x8000;
// 1<<9 NONE
public final static int BATTERY = 0x2000;
public final static int ACCEL_WR = 0x1000;
public final static int EXT_EXP_A15 = 0x0800;
public final static int INT_EXP_A1 = 0x0400;
public final static int INT_EXP_A12 = 0x0200;
public final static int INT_EXP_A13 = 0x0100;
public final static int INT_EXP_A14 = 0x800000;
public final static int ACCEL_MPU = 0x400000;
public final static int MAG_MPU = 0x200000;
public final static int EXG1_16BIT = 0x100000;
public final static int EXG2_16BIT = 0x080000;
public final static int BMP180 = 0x40000;
public final static int MPL_TEMPERATURE = 1<<22;
public final static int ACCEL_ALT = 0x400000;
public final static int MAG_ALT = 0X200000;
// 1<<23
//public final static int MPL_QUAT_6DOF = 1<<24;
//public final static int MPL_QUAT_9DOF = 1<<25;
//public final static int MPL_EULER_6DOF = 1<<26;
//public final static int MPL_EULER_9DOF = 1<<27;
//public final static int MPL_HEADING = 1<<28;
//public final static int MPL_PEDOMETER = 1<<29;
//public final static int MPL_TAP = 1<<30;
//public final static int MPL_MOTION_ORIENT = 1<<31;
//public final static long GYRO_MPU_MPL = 1<<32;
//public final static long ACCEL_MPU_MPL = 1<<33;
//public final static long MAG_MPU_MPL = 1<<34;
//public final static long SD_SENSOR_MPL_QUAT_6DOF_RAW = 1<<35;
}
protected Map<String, ChannelDetails> mChannelMap = new LinkedHashMap<String, ChannelDetails>();
//Constants describing the packet type
public static final byte DATA_PACKET = (byte) 0x00;
public static final byte INQUIRY_COMMAND = (byte) 0x01;
public static final byte INQUIRY_RESPONSE = (byte) 0x02;
public static final byte GET_SAMPLING_RATE_COMMAND = (byte) 0x03;
public static final byte SAMPLING_RATE_RESPONSE = (byte) 0x04;
public static final byte SET_SAMPLING_RATE_COMMAND = (byte) 0x05;
public static final byte TOGGLE_LED_COMMAND = (byte) 0x06;
public static final byte START_STREAMING_COMMAND = (byte) 0x07;
public static final byte SET_SENSORS_COMMAND = (byte) 0x08;
public static final byte SET_ACCEL_SENSITIVITY_COMMAND = (byte) 0x09;
public static final byte ACCEL_SENSITIVITY_RESPONSE = (byte) 0x0A;
public static final byte GET_ACCEL_SENSITIVITY_COMMAND = (byte) 0x0B;
public static final byte SET_5V_REGULATOR_COMMAND = (byte) 0x0C; // only Shimmer 2
public static final byte SET_PMUX_COMMAND = (byte) 0x0D; // only Shimmer 2
public static final byte SET_CONFIG_BYTE0_COMMAND = (byte) 0x0E;
public static final byte CONFIG_BYTE0_RESPONSE = (byte) 0x0F;
public static final byte GET_CONFIG_BYTE0_COMMAND = (byte) 0x10;
public static final byte STOP_STREAMING_COMMAND = (byte) 0x20;
public static final byte SET_ACCEL_CALIBRATION_COMMAND = (byte) 0x11;
public static final byte ACCEL_CALIBRATION_RESPONSE = (byte) 0x12;
public static final byte SET_LSM303DLHC_ACCEL_CALIBRATION_COMMAND = (byte) 0x1A;
public static final byte LSM303DLHC_ACCEL_CALIBRATION_RESPONSE = (byte) 0x1B;
public static final byte GET_LSM303DLHC_ACCEL_CALIBRATION_COMMAND = (byte) 0x1C;
public static final byte GET_ACCEL_CALIBRATION_COMMAND = (byte) 0x13;
public static final byte SET_GYRO_CALIBRATION_COMMAND = (byte) 0x14;
public static final byte GYRO_CALIBRATION_RESPONSE = (byte) 0x15;
public static final byte GET_GYRO_CALIBRATION_COMMAND = (byte) 0x16;
public static final byte SET_MAG_CALIBRATION_COMMAND = (byte) 0x17;
public static final byte MAG_CALIBRATION_RESPONSE = (byte) 0x18;
public static final byte GET_MAG_CALIBRATION_COMMAND = (byte) 0x19;
public static final byte SET_GSR_RANGE_COMMAND = (byte) 0x21;
public static final byte GSR_RANGE_RESPONSE = (byte) 0x22;
public static final byte GET_GSR_RANGE_COMMAND = (byte) 0x23;
public static final byte GET_SHIMMER_VERSION_COMMAND = (byte) 0x24;
public static final byte GET_SHIMMER_VERSION_COMMAND_NEW = (byte) 0x3F; //this is to avoid the $ char which is used by rn42
public static final byte GET_SHIMMER_VERSION_RESPONSE = (byte) 0x25;
public static final byte SET_EMG_CALIBRATION_COMMAND = (byte) 0x26;
public static final byte EMG_CALIBRATION_RESPONSE = (byte) 0x27;
public static final byte GET_EMG_CALIBRATION_COMMAND = (byte) 0x28;
public static final byte SET_ECG_CALIBRATION_COMMAND = (byte) 0x29;
public static final byte ECG_CALIBRATION_RESPONSE = (byte) 0x2A;
public static final byte GET_ECG_CALIBRATION_COMMAND = (byte) 0x2B;
public static final byte GET_ALL_CALIBRATION_COMMAND = (byte) 0x2C;
public static final byte ALL_CALIBRATION_RESPONSE = (byte) 0x2D;
public static final byte GET_FW_VERSION_COMMAND = (byte) 0x2E;
public static final byte FW_VERSION_RESPONSE = (byte) 0x2F;
public static final byte SET_BLINK_LED = (byte) 0x30;
public static final byte BLINK_LED_RESPONSE = (byte) 0x31;
public static final byte GET_BLINK_LED = (byte) 0x32;
public static final byte SET_GYRO_TEMP_VREF_COMMAND = (byte) 0x33;
public static final byte SET_BUFFER_SIZE_COMMAND = (byte) 0x34;
public static final byte BUFFER_SIZE_RESPONSE = (byte) 0x35;
public static final byte GET_BUFFER_SIZE_COMMAND = (byte) 0x36;
public static final byte SET_MAG_GAIN_COMMAND = (byte) 0x37;
public static final byte MAG_GAIN_RESPONSE = (byte) 0x38;
public static final byte GET_MAG_GAIN_COMMAND = (byte) 0x39;
public static final byte SET_MAG_SAMPLING_RATE_COMMAND = (byte) 0x3A;
public static final byte MAG_SAMPLING_RATE_RESPONSE = (byte) 0x3B;
public static final byte GET_MAG_SAMPLING_RATE_COMMAND = (byte) 0x3C;
public static final byte SET_ACCEL_SAMPLING_RATE_COMMAND = (byte) 0x40;
public static final byte ACCEL_SAMPLING_RATE_RESPONSE = (byte) 0x41;
public static final byte GET_ACCEL_SAMPLING_RATE_COMMAND = (byte) 0x42;
public static final byte SET_LSM303DLHC_ACCEL_LPMODE_COMMAND = (byte) 0x43;
public static final byte LSM303DLHC_ACCEL_LPMODE_RESPONSE = (byte) 0x44;
public static final byte GET_LSM303DLHC_ACCEL_LPMODE_COMMAND = (byte) 0x45;
public static final byte SET_LSM303DLHC_ACCEL_HRMODE_COMMAND = (byte) 0x46;
public static final byte LSM303DLHC_ACCEL_HRMODE_RESPONSE = (byte) 0x47;
public static final byte GET_LSM303DLHC_ACCEL_HRMODE_COMMAND = (byte) 0x48;
public static final byte SET_MPU9150_GYRO_RANGE_COMMAND = (byte) 0x49;
public static final byte MPU9150_GYRO_RANGE_RESPONSE = (byte) 0x4A;
public static final byte GET_MPU9150_GYRO_RANGE_COMMAND = (byte) 0x4B;;
public static final byte SET_MPU9150_SAMPLING_RATE_COMMAND = (byte) 0x4C;
public static final byte MPU9150_SAMPLING_RATE_RESPONSE = (byte) 0x4D;
public static final byte GET_MPU9150_SAMPLING_RATE_COMMAND = (byte) 0x4E;
public static final byte SET_BMP180_PRES_RESOLUTION_COMMAND = (byte) 0x52;
public static final byte BMP180_PRES_RESOLUTION_RESPONSE = (byte) 0x53;
public static final byte GET_BMP180_PRES_RESOLUTION_COMMAND = (byte) 0x54;
public static final byte SET_BMP180_PRES_CALIBRATION_COMMAND = (byte) 0x55;
public static final byte BMP180_PRES_CALIBRATION_RESPONSE = (byte) 0x56;
public static final byte GET_BMP180_PRES_CALIBRATION_COMMAND = (byte) 0x57;
public static final byte BMP180_CALIBRATION_COEFFICIENTS_RESPONSE = (byte) 0x58;
public static final byte GET_BMP180_CALIBRATION_COEFFICIENTS_COMMAND = (byte) 0x59;
public static final byte RESET_TO_DEFAULT_CONFIGURATION_COMMAND = (byte) 0x5A;
public static final byte RESET_CALIBRATION_VALUE_COMMAND = (byte) 0x5B;
public static final byte MPU9150_MAG_SENS_ADJ_VALS_RESPONSE = (byte) 0x5C;
public static final byte GET_MPU9150_MAG_SENS_ADJ_VALS_COMMAND = (byte) 0x5D;
public static final byte SET_INTERNAL_EXP_POWER_ENABLE_COMMAND = (byte) 0x5E;
public static final byte INTERNAL_EXP_POWER_ENABLE_RESPONSE = (byte) 0x5F;
public static final byte GET_INTERNAL_EXP_POWER_ENABLE_COMMAND = (byte) 0x60;
public static final byte SET_EXG_REGS_COMMAND = (byte) 0x61;
public static final byte EXG_REGS_RESPONSE = (byte) 0x62;
public static final byte GET_EXG_REGS_COMMAND = (byte) 0x63;
public static final byte DAUGHTER_CARD_ID_RESPONSE = (byte) 0x65;
public static final byte GET_DAUGHTER_CARD_ID_COMMAND = (byte) 0x66;
public static final byte SET_BAUD_RATE_COMMAND = (byte) 0x6A;
public static final byte BAUD_RATE_RESPONSE = (byte) 0x6B;
public static final byte GET_BAUD_RATE_COMMAND = (byte) 0x6C;
public static final byte SET_DERIVED_CHANNEL_BYTES = (byte) 0x6D;
public static final byte DERIVED_CHANNEL_BYTES_RESPONSE = (byte) 0x6E;
public static final byte GET_DERIVED_CHANNEL_BYTES = (byte) 0x6F;
public static final byte START_SDBT_COMMAND = (byte) 0x70;
public static final byte STATUS_RESPONSE = (byte) 0x71;
public static final byte GET_STATUS_COMMAND = (byte) 0x72;
public static final byte SET_TRIAL_CONFIG_COMMAND = (byte) 0x73;
public static final byte TRIAL_CONFIG_RESPONSE = (byte) 0x74;
public static final byte GET_TRIAL_CONFIG_COMMAND = (byte) 0x75;
public static final byte SET_CENTER_COMMAND = (byte) 0x76;
public static final byte CENTER_RESPONSE = (byte) 0x77;
public static final byte GET_CENTER_COMMAND = (byte) 0x78;
public static final byte SET_SHIMMERNAME_COMMAND = (byte) 0x79; //Shimmer Name
public static final byte SHIMMERNAME_RESPONSE = (byte) 0x7a;
public static final byte GET_SHIMMERNAME_COMMAND = (byte) 0x7b;
public static final byte SET_EXPID_COMMAND = (byte) 0x7c; //Experiment Name
public static final byte EXPID_RESPONSE = (byte) 0x7d;
public static final byte GET_EXPID_COMMAND = (byte) 0x7e;
public static final byte SET_MYID_COMMAND = (byte) 0x7F; //Shimmer ID in trial
public static final byte MYID_RESPONSE = (byte) 0x80;
public static final byte GET_MYID_COMMAND = (byte) 0x81;
public static final byte SET_NSHIMMER_COMMAND = (byte) 0x82;
public static final byte NSHIMMER_RESPONSE = (byte) 0x83;
public static final byte GET_NSHIMMER_COMMAND = (byte) 0x84;
public static final byte SET_CONFIGTIME_COMMAND = (byte) 0x85;
public static final byte CONFIGTIME_RESPONSE = (byte) 0x86;
public static final byte GET_CONFIGTIME_COMMAND = (byte) 0x87;
public static final byte DIR_RESPONSE = (byte) 0x88;
public static final byte GET_DIR_COMMAND = (byte) 0x89;
public static final byte INSTREAM_CMD_RESPONSE = (byte) 0x8A;
public static final byte SET_INFOMEM_COMMAND = (byte) 0x8C;
public static final byte INFOMEM_RESPONSE = (byte) 0x8D;
public static final byte GET_INFOMEM_COMMAND = (byte) 0x8E;
public static final byte SET_CRC_COMMAND = (byte) 0x8B;
public static final byte SET_RWC_COMMAND = (byte) 0x8F;
public static final byte RWC_RESPONSE = (byte) 0x90;
public static final byte GET_RWC_COMMAND = (byte) 0x91;
public static final byte ROUTINE_COMMUNICATION = (byte) 0xE0;
public static final byte ACK_COMMAND_PROCESSED = (byte) 0xFF;
public static final byte START_LOGGING_ONLY_COMMAND = (byte) 0x92;
public static final byte STOP_LOGGING_ONLY_COMMAND = (byte) 0x93;
public static final byte VBATT_RESPONSE = (byte) 0x94;
public static final byte GET_VBATT_COMMAND = (byte) 0x95;
public static final byte TEST_CONNECTION_COMMAND = (byte) 0x96;
public static final byte STOP_SDBT_COMMAND = (byte) 0x97;
//TODO 2017-06-19 replace with LiteProtocol values once the protobuf code has been updated to the newer values shown below
public static final byte GET_BMP280_CALIBRATION_COEFFICIENTS_COMMAND = (byte) 0xA0;//(byte) InstructionsGet.GET_BMP280_CALIBRATION_COEFFICIENTS_COMMAND_VALUE;
public static final byte BMP280_CALIBRATION_COEFFICIENTS_RESPONSE = (byte) 0x9F;//(byte) InstructionsResponse.BMP280_CALIBRATION_COEFFICIENTS_RESPONSE_VALUE;
public static final byte GET_PRESSURE_CALIBRATION_COEFFICIENTS_COMMAND = (byte) 0xA7;//BMP390
public static final byte PRESSURE_CALIBRATION_COEFFICIENTS_RESPONSE = (byte) 0xA6;//BMP390
public static final byte SET_PRESSURE_OVERSAMPLING_RATIO_COMMAND = (byte) 0x52;
public static final byte PRESSURE_OVERSAMPLING_RATIO_RESPONSE = (byte) 0x53;
public static final byte GET_PRESSURE_OVERSAMPLING_RATIO_COMMAND = (byte) 0x54;
public static final byte SET_PRESSURE_SAMPLING_RATE_COMMAND = (byte) 0xB5;
public static final byte PRESSURE_SAMPLING_RATE_RESPONSE = (byte) 0xB6;
public static final byte GET_PRESSURE_SAMPLING_RATE_COMMAND = (byte) 0xB7;
//new BT + SD command to set/rsp/get/update_dump_file all calibration parameters using the new byte array structure
public static final byte SET_CALIB_DUMP_COMMAND = (byte) 0x98;
public static final byte RSP_CALIB_DUMP_COMMAND = (byte) 0x99;
public static final byte GET_CALIB_DUMP_COMMAND = (byte) 0x9A;
public static final byte UPD_CALIB_DUMP_COMMAND = (byte) 0x9B;
//new BT + SD command to Write config file after all of InfoMem is written.
public static final byte UPD_SDLOG_CFG_COMMAND = (byte) 0x9C;
public static final byte GET_BT_FW_VERSION_STR_COMMAND = (byte) 0xA1;
public static final byte BT_FW_VERSION_STR_RESPONSE = (byte) 0xA2;
public static final byte SET_TEST = (byte) 0xA8;
public static final int MAX_NUMBER_OF_SIGNALS = 77;//50; //used to be 11 but now 13 because of the SR30 + 8 for 3d orientation
public static final int MAX_INQUIRY_PACKET_SIZE = 47;
public enum TEST_MODE {
MAIN_TEST((byte)0, "Main Test"),
LED_TEST((byte)1, "LED Test"),
IC_TEST((byte)2, "IC Test");
private final byte byteInstruction;
private final String description;
// Constructor to initialize the int and String values
TEST_MODE(byte byteInstruction, String description) {
this.byteInstruction = byteInstruction;
this.description = description;
}
// Getter to retrieve the int value
public byte getByteInstruction() {
return byteInstruction;
}
// Getter to retrieve the String value
public String getDescription() {
return description;
}
// Optional: Override toString() to include both values in the string representation
@Override
public String toString() {
return description + " (" + String.format("0x%02X", byteInstruction) + ")";
}
}
public static final Map<String,TEST_MODE> mMapOfBluetoothDeviceTest;
static {
Map<String,TEST_MODE> aMap = new LinkedHashMap<String,TEST_MODE>();
aMap.put(TEST_MODE.MAIN_TEST.getDescription(),TEST_MODE.MAIN_TEST);
aMap.put(TEST_MODE.LED_TEST.getDescription(),TEST_MODE.LED_TEST);
aMap.put(TEST_MODE.IC_TEST.getDescription(),TEST_MODE.IC_TEST);
mMapOfBluetoothDeviceTest = Collections.unmodifiableMap(aMap);
}
protected int mBluetoothBaudRate=9; //460800
protected int mPacketSize=0; // Default 2 bytes for time stamp and 6 bytes for accelerometer
protected long mConfigByte0;
public int mNChannels=0; // Default number of sensor channels set to three because of the on board accelerometer
protected int mBufferSize;
protected String[] mSignalNameArray=new String[MAX_NUMBER_OF_SIGNALS]; // 19 is the maximum number of signal thus far
protected String[] mSignalDataTypeArray=new String[MAX_NUMBER_OF_SIGNALS]; // 19 is the maximum number of signal thus far
protected int mButtonStart = 0;
protected int mDisableBluetooth = 0;
protected int mMasterShimmer = 0;
protected int mSingleTouch = 0;
protected int mTCXO = 0;
protected int mSyncWhenLogging = 0;
protected int mSyncBroadcastInterval = 0;
protected String mCenter = "";
private boolean isOverrideShowErrorLedsRtc = false;
private int mShowErrorLedsRtc = 0;
private boolean isOverrideShowErrorLedsSd = false;
private int mShowErrorLedsSd = 0;
private boolean mLowBattAutoStop = false;
protected int mTrialId = 0;
protected int mTrialNumberOfShimmers = 0;
protected int mTrialDurationEstimatedInSecs = 0;
protected int mTrialDurationMaximumInSecs = 0;
/** Used in BT communication */
protected String mMyBluetoothAddress="";
// /** Used in UART command through the base/dock*/
// protected String mMacIdFromUart = "";
/** Read from the InfoMem from UART command through the base/dock*/
protected String mMacIdFromInfoMem = "";
protected BluetoothModuleVersionDetails bluetoothModuleVersionDetails = new BluetoothModuleVersionDetails();
// protected String mShimmerUserAssignedName=""; // This stores the user assigned name
protected List<String> syncNodesList = new ArrayList<String>();
// ----------- Now implemented in SensorPPG -------------------------
protected int mPpgAdcSelectionGsrBoard = 0;
protected int mPpg1AdcSelectionProto3DeluxeBoard = 0;
protected int mPpg2AdcSelectionProto3DeluxeBoard = 0;
// ------------------------------------------------------------------
protected int mCurrentLEDStatus=0;
private double mLastKnownHeartRate=0;
protected DescriptiveStatistics mVSenseBattMA = new DescriptiveStatistics(1024); //YYY -BattVolt-SensorClass
Quat4d mQ = new Quat4d();
transient GradDes3DOrientation mOrientationAlgo;
private boolean mIsOrientationEnabled = false;
protected double mDefaultOnTheFlyGyroCalibThreshold = 1.2;
protected boolean mEnableCalibration = true;
protected boolean mConfigFileCreationFlag = true;
protected boolean mShimmerUsingConfigFromInfoMem = false;
protected boolean mUseInfoMemConfigMethod = true;
protected boolean mUseArraysDataStructureInObjectCluster = false;
protected byte[] mInquiryResponseBytes;
//This features are only used in LogAndStream FW
protected String mDirectoryName;
@Deprecated
private List<String[]> mExtraSignalProperties = null;
/** GQ BLE */
protected int mGqPacketNumHeaderBytes = 0;
/** GQ BLE */
protected int mSamplingDividerVBatt = 0;
/** GQ BLE */
protected int mSamplingDividerGsr = 0;
// ----------- Now implemented in SensorPPG -------------------------
/** GQ BLE */
protected int mSamplingDividerPpg = 0;
// ------------------------------------------------------------------
/** GQ BLE */
protected int mSamplingDividerLsm303dlhcAccel = 0;
/** GQ BLE */
protected int mSamplingDividerBeacon = 0;
protected abstract void checkBattery();
//-------- Timestamp related start --------
protected double mLastReceivedTimeStampTicksUnwrapped=0;
protected double mCurrentTimeStampCycle=0;
protected long mInitialTimeStampTicksSd = 0;
@Deprecated //not needed any more
protected double mLastReceivedCalibratedTimeStamp=-1;
protected boolean mStreamingStartTimeSaved = false;
protected double mStreamingStartTimeMilliSecs;
protected int mTimeStampPacketByteSize = 2;
protected int mTimeStampTicksMaxValue = 65536;// 16777216 or 65536
protected long mRTCDifferenceInTicks = 0; //this is in ticks
public int mRTCSetByBT = 1; // RTC source, = 1 because it comes from the BT
protected boolean mFirstTime = true;
/** This variable was originally implemented because the
* initial time in the SD header (i.e., the time when the header
* was created) wasn't equal to the first timestamp in the
* subsequent data packets (i.e., the lower 3 bytes of the
* initial timestamp). This problem has since been addressed in
* firmware whereby the header is updated with the timestamp
* from the first packet. Therefore this variable is redundant. */
protected double mFirstTsOffsetFromInitialTsTicks = 0;
public int OFFSET_LENGTH = 9;
//-------- Timestamp related end --------
// Shimmer2/2r - Analog accel
protected SensorMMA736x mSensorMMA736x = new SensorMMA736x(this);
// Shimmer2 Mag
protected SensorShimmer2Mag mSensorShimmer2Mag = new SensorShimmer2Mag(this);
// Shimmer2 - Gyro
protected SensorShimmer2Gyro mSensorShimmer2Gyro = new SensorShimmer2Gyro(this);
// Shimmer3 - Analog accel
private SensorKionixAccel mSensorKionixAccel = new SensorKionixKXRB52042(this);
// Shimmer3 Wide-range accel and mag
private SensorLSM303 mSensorLSM303 = new SensorLSM303DLHC(this);
// Shimmer3 - Gyro
protected SensorMPU9X50 mSensorMpu9x50 = new SensorMPU9150(this);
// Shimmer3 - Pressure/Temperature
public SensorBMPX80 mSensorBMPX80 = new SensorBMP180(this);
// Shimmer3r - Mag
private SensorLIS2MDL mSensorLIS2MDL = new SensorLIS2MDL(this);
// Shimmer3r - Alt Mag
private SensorLIS3MDL mSensorLIS3MDL = new SensorLIS3MDL(this);
// Shimmer3R - WR Accel
private SensorLIS2DW12 mSensorLIS2DW12 = new SensorLIS2DW12(this);
// Shimmer3r - Accel LN & Gyro
private SensorLSM6DSV mSensorLSM6DSV = new SensorLSM6DSV(this);
// Shimmer3r - High-g accel
protected SensorADXL371 mSensorADXL371 = new SensorADXL371(this);
// ---------- ECG/EMG start ---------------
protected double OffsetECGRALL=2060;
protected double GainECGRALL=175;
protected double OffsetECGLALL=2060;
protected double GainECGLALL=175;
protected double OffsetEMG=2060;
protected double GainEMG=750;
/** 0 = 16 bit, 1 = 24 bit */
protected int mExGResolution = 1;
protected boolean mIsExg1_24bitEnabled = false;
protected boolean mIsExg2_24bitEnabled = false;
protected boolean mIsExg1_16bitEnabled = false;
protected boolean mIsExg2_16bitEnabled = false;
//Shimmer2r and not Shimmer3?
protected byte[] mEMGCalRawParams = new byte[13];
protected byte[] mECGCalRawParams = new byte[13];
protected boolean mDefaultCalibrationParametersECG = true;
protected boolean mDefaultCalibrationParametersEMG = true;
//EXG
protected ExGConfigBytesDetails mExGConfigBytesDetails = new ExGConfigBytesDetails();
protected byte[] mEXG1RegisterArray = new byte[10];
protected byte[] mEXG2RegisterArray = new byte[10];
//Gain is set at 6 (default) in eq. below until updated later in the connection/configuration sequence
protected double exg1Ch1CalFactor24Bit = (((2.42*1000)/6)/(Math.pow(2,23)-1));
protected double exg1Ch2CalFactor24Bit = (((2.42*1000)/6)/(Math.pow(2,23)-1));
protected double exg2Ch1CalFactor24Bit = (((2.42*1000)/6)/(Math.pow(2,23)-1));
protected double exg2Ch2CalFactor24Bit = (((2.42*1000)/6)/(Math.pow(2,23)-1));
protected double exg1Ch1CalFactor16Bit = (((2.42*1000)/6)/(Math.pow(2,15)-1));
protected double exg1Ch2CalFactor16Bit = (((2.42*1000)/6)/(Math.pow(2,15)-1));
protected double exg2Ch1CalFactor16Bit = (((2.42*1000)/6)/(Math.pow(2,15)-1));
protected double exg2Ch2CalFactor16Bit = (((2.42*1000)/6)/(Math.pow(2,15)-1));
@Deprecated
private int mEXG1RateSetting; //setting not value
@Deprecated
private int mEXG1CH1GainSetting; // this is the setting not to be confused with the actual value
@Deprecated
private int mEXG1CH1GainValue; // this is the value
@Deprecated
private int mEXG1CH2GainSetting; // this is the setting not to be confused with the actual value
@Deprecated
private int mEXG1CH2GainValue; // this is the value
@Deprecated
private int mEXG2RateSetting; //setting not value
@Deprecated
private int mEXG2CH1GainSetting; // this is the setting not to be confused with the actual value
@Deprecated
private int mEXG2CH1GainValue; // this is the value
@Deprecated
private int mEXG2CH2PowerDown;//Not used in ShimmerBluetooth
@Deprecated
private int mEXG2CH2GainSetting; // this is the setting not to be confused with the actual value
@Deprecated
private int mEXG2CH2GainValue; // this is the value
//EXG ADVANCED
@Deprecated
private int mEXGReferenceElectrode=-1;
@Deprecated
private int mLeadOffDetectionMode;
@Deprecated
private int mEXG1LeadOffCurrentMode;
@Deprecated
private int mEXG2LeadOffCurrentMode;
@Deprecated
private int mEXG1Comparators;
@Deprecated
private int mEXG2Comparators;
@Deprecated
private int mEXGRLDSense;
@Deprecated
private int mEXG1LeadOffSenseSelection;
@Deprecated
private int mEXG2LeadOffSenseSelection;
@Deprecated
private int mEXGLeadOffDetectionCurrent;
@Deprecated
private int mEXGLeadOffComparatorTreshold;
@Deprecated
private int mEXG2RespirationDetectState;//Not used in ShimmerBluetooth
@Deprecated
private int mEXG2RespirationDetectFreq;//Not used in ShimmerBluetooth
@Deprecated
private int mEXG2RespirationDetectPhase;//Not used in ShimmerBluetooth
// ---------- ECG/EMG end ---------------
// ---------- GSR start ------------------
protected int mGSRRange=4; // This stores the current GSR range being used.
protected int mPastGSRRange=4; // this is to fix a bug with SDLog v0.9
protected int mPastGSRUncalibratedValue=4; // this is to fix a bug with SDLog v0.9
protected boolean mPastGSRFirstTime=true; // this is to fix a bug with SDLog v0.9
// ---------- GSR end ------------------
public ObjectCluster setLSLTimeIfAvailable(ObjectCluster ojc) {
return ojc;
}
/** This method will be deprecated for future Shimmer hardware revisions. The last hardware this will be used for is Shimmer3.
* It should work with all FW associated with Shimmer3 and Shimmer2 devices.
*
* Future hardware which WON'T be using this will start with ShimmerGQ HW.
*
* @param newPacket
* @param fwType
* @param isTimeSyncEnabled
* @param pcTimestampMs this is only used by shimmerbluetooth, set to -1 if not using
* @return
*/
@Override
public ObjectCluster buildMsg(byte[] newPacket, COMMUNICATION_TYPE fwType, boolean isTimeSyncEnabled, double pcTimestampMs) {
ObjectCluster objectCluster = new ObjectCluster();
setLSLTimeIfAvailable(objectCluster);
if(mUseArraysDataStructureInObjectCluster) {
objectCluster.mEnableArraysDataStructure = true; //This will disable the Multimap as well
}
objectCluster.setShimmerName(mShimmerUserAssignedName);
objectCluster.setMacAddress(mMyBluetoothAddress);
objectCluster.mRawData = newPacket;
if(fwType!=COMMUNICATION_TYPE.BLUETOOTH && fwType!=COMMUNICATION_TYPE.SD){
// throw new Exception("The Firmware is not compatible");
consolePrintErrLn("The Firmware is not compatible");
}
int numCalibratedData = mNChannels;
int numUncalibratedData = mNChannels;
int numUncalibratedDataUnits = mNChannels;
int numCalibratedDataUnits = mNChannels;
int numSensorNames = mNChannels;
int numAdditionalChannels = 0;
int indexAlgo = 0;
if (fwType == COMMUNICATION_TYPE.BLUETOOTH){
// objectCluster.mSystemTimeStampBytes=ByteBuffer.allocate(8).putLong(pcTimestamp).array();
objectCluster.setSystemTimeStamp(pcTimestampMs);
//plus 1 because of: timestamp
numAdditionalChannels += 1;
//plus 4 because of: batt percent, PRR Current, PRR Trial, system timestamp
numAdditionalChannels += 4;
//Event Markers
numAdditionalChannels += 1;
}
else {
if (fwType == COMMUNICATION_TYPE.SD && getHardwareVersion()==HW_ID.SHIMMER_3R) {
//plus 1 because of: timestamp, because we are no longer relying on interpretdatapacketformat within ShimmerSDLog
numAdditionalChannels += 1;
}
if (!isRtcDifferenceSet()){
//sd log time stamp already included in mnChannels
}
else {
//for RTC
numAdditionalChannels += 1;
}
}
// if (fwType == COMMUNICATION_TYPE.BLUETOOTH){ // Here so as not to mess with ShimmerSDLog
//for ECG LL-LA Channel added&calculated in API
if(isEXGUsingDefaultECGConfiguration() || isEXGUsingDefaultRespirationConfiguration()){
numAdditionalChannels += 1;
}
// }
// adding channels from enabled algorithms details
//
for(AbstractAlgorithm aA: getListOfEnabledAlgorithmModules()){
numAdditionalChannels += aA.getNumberOfEnabledChannels();
}
if(is3DOrientationEnabled()) {
//JY: Add the number of 9DOF channels to sensorNames so that sensorNamesAlgo has space to be copied in later.
//This is because setting mIsOrientationEnabled does not add to the listOfEnabledAlgorithmModules
numAdditionalChannels += 8;
}
//numAdditionalChannels += 15;
double [] calibratedData = new double[numCalibratedData+numAdditionalChannels];
double [] uncalibratedData = new double[numUncalibratedData+numAdditionalChannels];
String [] uncalibratedDataUnits = new String[numUncalibratedDataUnits+numAdditionalChannels];
String [] calibratedDataUnits = new String[numCalibratedDataUnits+numAdditionalChannels];
String [] sensorNames = new String[numSensorNames+numAdditionalChannels];
double [] calDataAlgo = null;
String [] calDataUnitsAlgo = null;
String [] sensorNamesAlgo = null;
if(is3DOrientationEnabled()) {
//Add 8 channels for 9DOF Quats & Eulers
calDataAlgo = new double[8];
calDataUnitsAlgo = new String[8];
sensorNamesAlgo = new String[8];
}
objectCluster.sensorDataArray = new SensorDataArray(numCalibratedData+numAdditionalChannels);
System.arraycopy(mSignalNameArray, 0, sensorNames, 0, sensorNames.length);
// the above is throwing an error
//sensorNames = Arrays.copyOf(mSignalNameArray, mSignalNameArray.length);
//PARSE DATA
long[] newPacketInt = null;
try{
newPacketInt = UtilParseData.parseData(newPacket, mSignalDataTypeArray);
} catch(IndexOutOfBoundsException e){
String debugString = "SignalDataTypeArray:";
for(String s:mSignalDataTypeArray){
debugString += "\t" + s;
}
System.out.println(debugString);
System.out.println("newPacket:\t" + UtilShimmer.bytesToHexStringWithSpacesFormatted(newPacket));
throw(e);
}
double[] tempData=new double[3];
Vector3d accelerometer = new Vector3d();
Vector3d magnetometer = new Vector3d();
Vector3d gyroscope = new Vector3d();
if (getHardwareVersion()==HW_ID.SHIMMER_SR30 || getHardwareVersion()==HW_ID.SHIMMER_3 || getHardwareVersion()==HW_ID.SHIMMER_3R
|| getHardwareVersion()==HW_ID.SHIMMER_GQ_802154_LR || getHardwareVersion()==HW_ID.SHIMMER_GQ_802154_NR || getHardwareVersion()==HW_ID.SHIMMER_2R_GQ){
parseTimestampShimmer3(fwType, objectCluster, uncalibratedData, uncalibratedDataUnits, calibratedData, calibratedDataUnits, sensorNames, newPacketInt);
//OFFSET
if(isTimeSyncEnabled && (fwType == COMMUNICATION_TYPE.SD)){
int iOffset=getSignalIndex(SensorShimmerClock.ObjectClusterSensorName.TIMESTAMP_OFFSET); //find index
double offsetValue = Double.NaN;
if (OFFSET_LENGTH==9){
if(newPacketInt[iOffset] == 1152921504606846975L){
offsetValue=Double.NaN;
} else {
offsetValue=(double)newPacketInt[iOffset];
}
}
else{
if(newPacketInt[iOffset] == 4294967295L){ //this is 4 bytes
offsetValue=Double.NaN;
} else {
offsetValue=(double)newPacketInt[iOffset];
}
}
objectCluster.addDataToMap(SensorShimmerClock.ObjectClusterSensorName.TIMESTAMP_OFFSET,CHANNEL_TYPE.UNCAL.toString(),CHANNEL_UNITS.NO_UNITS,offsetValue);
objectCluster.addDataToMap(SensorShimmerClock.ObjectClusterSensorName.TIMESTAMP_OFFSET,CHANNEL_TYPE.CAL.toString(),CHANNEL_UNITS.NO_UNITS,Double.NaN);
uncalibratedData[iOffset] = offsetValue;
calibratedData[iOffset] = Double.NaN;
uncalibratedDataUnits[iOffset] = CHANNEL_UNITS.NO_UNITS;
calibratedDataUnits[iOffset] = CHANNEL_UNITS.NO_UNITS;
}
//Used anywhere?
objectCluster = callAdditionalServices(objectCluster);
//first get raw and calibrated data, this is data derived from the Shimmer device and involves no involvement from the API
if (((fwType == COMMUNICATION_TYPE.BLUETOOTH) && (mEnabledSensors & BTStream.ACCEL_LN) > 0)
|| ((fwType == COMMUNICATION_TYPE.SD) && (mEnabledSensors & SDLogHeader.ACCEL_LN) > 0)){
int iAccelX=getSignalIndex(Shimmer3.ObjectClusterSensorName.ACCEL_LN_X); //find index
int iAccelY=getSignalIndex(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Y); //find index
int iAccelZ=getSignalIndex(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Z); //find index
tempData[0]=(double)newPacketInt[iAccelX];
tempData[1]=(double)newPacketInt[iAccelY];
tempData[2]=(double)newPacketInt[iAccelZ];
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_X,CHANNEL_TYPE.UNCAL.toString().toString(),CHANNEL_UNITS.NO_UNITS,(double)newPacketInt[iAccelX]);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Y,CHANNEL_TYPE.UNCAL.toString(),CHANNEL_UNITS.NO_UNITS,(double)newPacketInt[iAccelY]);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Z,CHANNEL_TYPE.UNCAL.toString(),CHANNEL_UNITS.NO_UNITS,(double)newPacketInt[iAccelZ]);
uncalibratedData[iAccelX]=(double)newPacketInt[iAccelX];
uncalibratedData[iAccelY]=(double)newPacketInt[iAccelY];
uncalibratedData[iAccelZ]=(double)newPacketInt[iAccelZ];
uncalibratedDataUnits[iAccelX]=CHANNEL_UNITS.NO_UNITS;
uncalibratedDataUnits[iAccelY]=CHANNEL_UNITS.NO_UNITS;
uncalibratedDataUnits[iAccelZ]=CHANNEL_UNITS.NO_UNITS;
if (mEnableCalibration){
double[] accelCalibratedData;
// accelCalibratedData=UtilCalibration.calibrateInertialSensorData(tempData, mAlignmentMatrixAnalogAccel, mSensitivityMatrixAnalogAccel, mOffsetVectorAnalogAccel);
accelCalibratedData=UtilCalibration.calibrateInertialSensorData(tempData, getCurrentCalibDetailsAccelLn());
calibratedData[iAccelX]=accelCalibratedData[0];
calibratedData[iAccelY]=accelCalibratedData[1];
calibratedData[iAccelZ]=accelCalibratedData[2];
if (isShimmerGen3R()) {
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_X, CHANNEL_TYPE.CAL.toString(), CHANNEL_UNITS.ACCEL_CAL_UNIT, accelCalibratedData[0], mSensorLSM6DSV.mIsUsingDefaultLNAccelParam);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Y, CHANNEL_TYPE.CAL.toString(), CHANNEL_UNITS.ACCEL_CAL_UNIT, accelCalibratedData[1], mSensorLSM6DSV.mIsUsingDefaultLNAccelParam);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Z, CHANNEL_TYPE.CAL.toString(), CHANNEL_UNITS.ACCEL_CAL_UNIT, accelCalibratedData[2], mSensorLSM6DSV.mIsUsingDefaultLNAccelParam);
}
else if (isShimmerGen3()) {
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_X,CHANNEL_TYPE.CAL.toString(),CHANNEL_UNITS.ACCEL_CAL_UNIT,accelCalibratedData[0],mSensorKionixAccel.mIsUsingDefaultLNAccelParam);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Y,CHANNEL_TYPE.CAL.toString(),CHANNEL_UNITS.ACCEL_CAL_UNIT,accelCalibratedData[1],mSensorKionixAccel.mIsUsingDefaultLNAccelParam);
objectCluster.addDataToMap(Shimmer3.ObjectClusterSensorName.ACCEL_LN_Z,CHANNEL_TYPE.CAL.toString(),CHANNEL_UNITS.ACCEL_CAL_UNIT,accelCalibratedData[2],mSensorKionixAccel.mIsUsingDefaultLNAccelParam);
}
calibratedDataUnits[iAccelX] = CHANNEL_UNITS.ACCEL_CAL_UNIT;
calibratedDataUnits[iAccelY] = CHANNEL_UNITS.ACCEL_CAL_UNIT;