Description of the issue
I encountered a series of critical errors when using the TraianProt package to analyze the included DIA-NN example dataset, preventing completion of the analysis workflow. The errors occur sequentially during app initialization, data filtering, and quality control visualization. Environment:
R version: 4.5.2
Package started via: runTraianProt()
Steps to Reproduce
Launch the Shiny application successfully.
Navigate to the "Preprocessing" module.
Error 1: Immediately, before uploading any file, a read.table error appears in the console.
Error 2: Ignoring the above, upload the provided DIA-NN example data.
Attempt any preprocessing step; errors regarding group and Potential.contaminant columns appear.
Error 3: Proceed with only the "Normalization" option enabled, then navigate to the "Quality Control" module. The plots fail to render, and the console floods with "undefined columns selected" errors. Thank you for developing this tool. I am keen to use it for my research and appreciate any guidance on resolving these issues.
Description of the issue
I encountered a series of critical errors when using the TraianProt package to analyze the included DIA-NN example dataset, preventing completion of the analysis workflow. The errors occur sequentially during app initialization, data filtering, and quality control visualization. Environment:
R version: 4.5.2
Package started via: runTraianProt()
Steps to Reproduce
Launch the Shiny application successfully.
Navigate to the "Preprocessing" module.
Error 1: Immediately, before uploading any file, a read.table error appears in the console.
Error 2: Ignoring the above, upload the provided DIA-NN example data.
Attempt any preprocessing step; errors regarding group and Potential.contaminant columns appear.
Error 3: Proceed with only the "Normalization" option enabled, then navigate to the "Quality Control" module. The plots fail to render, and the console floods with "undefined columns selected" errors. Thank you for developing this tool. I am keen to use it for my research and appreciate any guidance on resolving these issues.