DESCRIPTION

Package: HNSCclassifier
Title: HNSCclassifier: An R Package to Predict Molecular Subtypes of Head and Neck Squamous Cell Carcinoma
Version: 0.1.0
Authors@R: 
    person("Jiang", "Li", email="ronlee12355@outlook.com", role = c("aut", "cre"))
Description: Description: This package provides a robust classifier to assign head and neck
    squamous cell carcinoma (HNSCC) samples to the established TCGA molecular
    subtypes (Atypical, Basal, Classical, Mesenchymal). It implements a
    pathway-level normalization strategy based on single-sample gene set
    enrichment (ssGSEA) and a pre-trained random forest model. The package
    includes a command-line function for batch prediction and an interactive
    Shiny web interface for users without programming experience.
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: 
    R (>= 4.3)
URL: https://github.com/Ronlee12355/HNSCclassifier
BugReports: https://github.com/Ronlee12355/HNSCclassifier/issues
LazyData: true
LazyDataCompression: xz
Imports:
    GSVA,
    randomForest,
    shiny,
    ggplot2,
    pheatmap,
    AnnotationDbi,
    org.Hs.eg.db,
Suggests:
    caret,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    DT,
    shinythemes,
    shinyjs
VignetteBuilder: knitr
License: GPL (>= 3)
Config/testthat/edition: 3