pytest.ini

[pytest]
pythonpath = .
addopts = --import-mode=importlib
testpaths =
    skills/diff-visualizer/tests
    skills/pharmgx-reporter/tests
    skills/equity-scorer/tests
    skills/nutrigx_advisor/tests
    skills/genome-compare/tests
    skills/gwas-prs/tests
    skills/gwas-lookup/tests
    skills/clinpgx/tests
    skills/claw-ancestry-pca/tests
    skills/scrna-orchestrator/tests
    skills/scrna-embedding/tests
    skills/profile-report/tests
    skills/galaxy-bridge/tests
    skills/bioconductor-bridge/tests
    skills/illumina-bridge/tests
    skills/rnaseq-de/tests
    skills/methylation-clock/tests
    skills/protocols-io/tests
    skills/pubmed-summariser/tests
    skills/variant-annotation/tests
    skills/labstep/tests
    skills/fine-mapping/tests
    skills/bigquery-public/tests
    tests/benchmark
    skills/clinical-variant-reporter/tests
    skills/mendelian-randomisation/tests
python_files = test_*.py
python_functions = test_*